Sequence Similarity Clusters for the Entities in PDB 1OED

Entity #1 | Chains: A,D
ACETYLCHOLINE RECEPTOR PROTEIN, ALPHA CHAIN protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 42803
95 % 1 1 35914
90 % 1 1 34303
70 % 1 1 30518
50 % 1 1 27501
40 % 1 2 17342
30 % 1 4 9790
Entity #2 | Chains: B
ACETYLCHOLINE RECEPTOR PROTEIN, BETA CHAIN protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62629
95 % 1 1 50931
90 % 1 1 48304
70 % 1 1 42303
50 % 1 1 35893
40 % 2 2 17342
30 % 2 4 9790
Entity #3 | Chains: C
ACETYLCHOLINE RECEPTOR PROTEIN, DELTA CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66642
95 % 1 1 53963
90 % 1 1 51136
70 % 1 1 44713
50 % 1 1 37911
40 % 1 2 24121
30 % 3 4 9790
Entity #4 | Chains: E
ACETYLCHOLINE RECEPTOR PROTEIN, GAMMA CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66643
95 % 1 1 53964
90 % 1 1 51137
70 % 1 1 44714
50 % 1 1 37912
40 % 2 2 24121
30 % 4 4 9790

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures