Sequence Similarity Clusters for the Entities in PDB 1OED

Entity #1 | Chains: A,D
ACETYLCHOLINE RECEPTOR PROTEIN, ALPHA CHAIN protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41188
95 % 1 1 31543
90 % 1 1 30380
70 % 1 1 27267
50 % 1 1 23247
40 % 1 2 16099
30 % 1 4 9525
Entity #2 | Chains: B
ACETYLCHOLINE RECEPTOR PROTEIN, BETA CHAIN protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60287
95 % 1 1 42618
90 % 1 1 40656
70 % 1 1 35993
50 % 1 1 30667
40 % 2 2 16099
30 % 2 4 9525
Entity #3 | Chains: C
ACETYLCHOLINE RECEPTOR PROTEIN, DELTA CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59748
95 % 1 1 42359
90 % 1 1 40413
70 % 1 1 35803
50 % 1 1 30529
40 % 1 2 19980
30 % 3 4 9525
Entity #4 | Chains: E
ACETYLCHOLINE RECEPTOR PROTEIN, GAMMA CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59749
95 % 1 1 42360
90 % 1 1 40414
70 % 1 1 35804
50 % 1 1 30530
40 % 2 2 19980
30 % 4 4 9525

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures