Sequence Similarity Clusters for the Entities in PDB 1OED

Entity #1 | Chains: A,D
ACETYLCHOLINE RECEPTOR PROTEIN, ALPHA CHAIN protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 38913
95 % 1 1 29860
90 % 1 1 28789
70 % 1 1 25966
50 % 1 1 22208
40 % 1 2 15351
30 % 1 4 9000
Entity #2 | Chains: B
ACETYLCHOLINE RECEPTOR PROTEIN, BETA CHAIN protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57135
95 % 1 1 40432
90 % 1 1 38645
70 % 1 1 34350
50 % 1 1 29330
40 % 2 2 15351
30 % 2 4 9000
Entity #3 | Chains: C
ACETYLCHOLINE RECEPTOR PROTEIN, DELTA CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56626
95 % 1 1 40191
90 % 1 1 38420
70 % 1 1 34172
50 % 1 1 29196
40 % 1 2 19096
30 % 3 4 9000
Entity #4 | Chains: E
ACETYLCHOLINE RECEPTOR PROTEIN, GAMMA CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56627
95 % 1 1 40192
90 % 1 1 38421
70 % 1 1 34173
50 % 1 1 29197
40 % 2 2 19096
30 % 4 4 9000

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.