Sequence Similarity Clusters for the Entities in PDB 1OED

Entity #1 | Chains: A,D
ACETYLCHOLINE RECEPTOR PROTEIN, ALPHA CHAIN protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 37758
95 % 1 1 28976
90 % 1 1 27951
70 % 1 1 25249
50 % 1 1 21637
40 % 1 2 14954
30 % 1 4 8758
Entity #2 | Chains: B
ACETYLCHOLINE RECEPTOR PROTEIN, BETA CHAIN protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55512
95 % 1 1 39243
90 % 1 1 37544
70 % 1 1 33419
50 % 1 1 28589
40 % 2 2 14954
30 % 2 4 8758
Entity #3 | Chains: C
ACETYLCHOLINE RECEPTOR PROTEIN, DELTA CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55011
95 % 1 1 39005
90 % 1 1 37322
70 % 1 1 33243
50 % 1 1 28457
40 % 1 2 18605
30 % 3 4 8758
Entity #4 | Chains: E
ACETYLCHOLINE RECEPTOR PROTEIN, GAMMA CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55012
95 % 1 1 39006
90 % 1 1 37323
70 % 1 1 33244
50 % 1 1 28458
40 % 2 2 18605
30 % 4 4 8758

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.