Sequence Similarity Clusters for the Entities in PDB 1OED

Entity #1 | Chains: A,D
ACETYLCHOLINE RECEPTOR PROTEIN, ALPHA CHAIN protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39916
95 % 1 1 30636
90 % 1 1 29526
70 % 1 1 26529
50 % 1 1 22647
40 % 1 2 15678
30 % 1 4 9252
Entity #2 | Chains: B
ACETYLCHOLINE RECEPTOR PROTEIN, BETA CHAIN protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58540
95 % 1 1 41443
90 % 1 1 39574
70 % 1 1 35076
50 % 1 1 29909
40 % 2 2 15678
30 % 2 4 9252
Entity #3 | Chains: C
ACETYLCHOLINE RECEPTOR PROTEIN, DELTA CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58015
95 % 1 1 41185
90 % 1 1 39333
70 % 1 1 34886
50 % 1 1 29772
40 % 1 2 19471
30 % 3 4 9252
Entity #4 | Chains: E
ACETYLCHOLINE RECEPTOR PROTEIN, GAMMA CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58016
95 % 1 1 41186
90 % 1 1 39334
70 % 1 1 34887
50 % 1 1 29773
40 % 2 2 19471
30 % 4 4 9252

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.