Sequence Similarity Clusters for the Entities in PDB 1OED

Entity #1 | Chains: A,D
ACETYLCHOLINE RECEPTOR PROTEIN, ALPHA CHAIN protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40647
95 % 1 1 31139
90 % 1 1 29996
70 % 1 1 26935
50 % 1 1 22980
40 % 1 2 15918
30 % 1 4 9405
Entity #2 | Chains: B
ACETYLCHOLINE RECEPTOR PROTEIN, BETA CHAIN protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59501
95 % 1 1 42078
90 % 1 1 40156
70 % 1 1 35567
50 % 1 1 30311
40 % 2 2 15918
30 % 2 4 9405
Entity #3 | Chains: C
ACETYLCHOLINE RECEPTOR PROTEIN, DELTA CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58974
95 % 1 1 41819
90 % 1 1 39914
70 % 1 1 35377
50 % 1 1 30174
40 % 1 2 19751
30 % 3 4 9405
Entity #4 | Chains: E
ACETYLCHOLINE RECEPTOR PROTEIN, GAMMA CHAIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58975
95 % 1 1 41820
90 % 1 1 39915
70 % 1 1 35378
50 % 1 1 30175
40 % 2 2 19751
30 % 4 4 9405

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures