Sequence Similarity Clusters for the Entities in PDB 1OCZ

Entity #1 | Chains: A,N
CYTOCHROME C OXIDASE protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 44 403
95 % 37 46 535 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 37 46 562
70 % 37 46 600
50 % 50 62 472
40 % 50 62 516
30 % 50 62 508
Entity #10 | Chains: J,W
CYTOCHROME C OXIDASE protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 43 421
95 % 36 45 565 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.3
PDBFlex
90 % 36 45 594
70 % 36 45 636
50 % 36 45 683
40 % 36 45 714
30 % 36 45 712
Entity #11 | Chains: K,X
CYTOCHROME C OXIDASE protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 40 453
95 % 35 40 627 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 40 656
70 % 35 40 709
50 % 35 40 761
40 % 35 40 797
30 % 35 40 788
Entity #12 | Chains: L,Y
CYTOCHROME C OXIDASE protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 45 408
95 % 36 45 566 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 36 45 595
70 % 36 45 637
50 % 36 45 684
40 % 36 45 715
30 % 36 45 713
Entity #13 | Chains: M,Z
CYTOCHROME C OXIDASE protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 45 409
95 % 36 45 567 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 36 45 596
70 % 36 45 638
50 % 36 45 685
40 % 36 45 716
30 % 36 45 714
Entity #2 | Chains: B,O
CYTOCHROME C OXIDASE protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 44 404
95 % 37 46 539 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 37 46 566
70 % 37 46 605
50 % 37 46 649
40 % 37 46 679
30 % 47 59 527
Entity #3 | Chains: C,P
CYTOCHROME C OXIDASE protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 4508
95 % 37 46 538 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 46 565
70 % 37 46 604
50 % 37 46 648
40 % 38 50 625
30 % 38 50 612
Entity #4 | Chains: D,Q
CYTOCHROME C OXIDASE protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 43 417
95 % 36 45 559 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 36 45 588
70 % 36 45 631
50 % 36 45 677
40 % 36 45 705
30 % 36 45 705
Entity #5 | Chains: E,R
CYTOCHROME C OXIDASE protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 45 406
95 % 36 45 562 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 36 45 591
70 % 36 45 633
50 % 36 45 680
40 % 36 45 710
30 % 36 45 708
Entity #6 | Chains: F,S
CYTOCHROME C OXIDASE protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 43 418
95 % 36 45 563 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 36 45 592
70 % 36 45 634
50 % 36 45 681
40 % 36 45 711
30 % 36 45 709
Entity #7 | Chains: G,T
CYTOCHROME C OXIDASE protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 43 419
95 % 36 45 564 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 0.9
PDBFlex
90 % 36 45 593
70 % 36 45 635
50 % 36 45 682
40 % 36 45 712
30 % 36 45 710
Entity #8 | Chains: H,U
CYTOCHROME C OXIDASE protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 46 394
95 % 37 46 543 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 37 46 568
70 % 37 46 607
50 % 37 46 653
40 % 37 46 683
30 % 37 46 679
Entity #9 | Chains: I,V
CYTOCHROME C OXIDASE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 44 407
95 % 37 46 544 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 37 46 569
70 % 37 46 608
50 % 37 46 655
40 % 37 46 685
30 % 37 46 681

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures