Sequence Similarity Clusters for the Entities in PDB 1OCW

Entity #1 | Chains: H
IMMUNOGLOBULIN E protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 4218
95 % 4 8 3684 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.8
PDBFlex
90 % 7 11 2814
70 % 29 82 257
50 % 261 536 8
40 % 428 882 5
30 % 482 1008 7
Entity #2 | Chains: L
IMMUNOGLOBULIN E protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 4219
95 % 8 12 2121 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 9 13 2098
70 % 9 13 2097
50 % 148 301 22
40 % 429 882 5
30 % 483 1008 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.