Sequence Similarity Clusters for the Entities in PDB 1OCW

Entity #1 | Chains: H
IMMUNOGLOBULIN E protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 4927
95 % 4 8 3848 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.8
PDBFlex
90 % 7 11 2931
70 % 31 87 266
50 % 296 613 6
40 % 2334 5834 1
30 % 2849 7269 1
Entity #2 | Chains: L
IMMUNOGLOBULIN E protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 33338
95 % 8 12 2335 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 8 12 2402
70 % 9 13 2247
50 % 153 319 21
40 % 173 363 27
30 % 2850 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures