Sequence Similarity Clusters for the Entities in PDB 1OCR

Entity #1 | Chains: A,N
CYTOCHROME C OXIDASE protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 44 399
95 % 31 46 527 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 31 46 555
70 % 31 46 586
50 % 40 61 477
40 % 40 61 514
30 % 40 61 513
Entity #10 | Chains: J,W
CYTOCHROME C OXIDASE protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 43 418
95 % 30 45 558 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.3
PDBFlex
90 % 30 45 586
70 % 30 45 619
50 % 30 45 667
40 % 30 45 702
30 % 30 45 696
Entity #11 | Chains: K,X
CYTOCHROME C OXIDASE protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 40 451
95 % 29 40 622 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 29 40 651
70 % 29 40 700
50 % 29 40 750
40 % 29 40 785
30 % 29 40 774
Entity #12 | Chains: L,Y
CYTOCHROME C OXIDASE protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 45 404
95 % 30 45 559 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 30 45 587
70 % 30 45 620
50 % 30 45 668
40 % 30 45 703
30 % 30 45 697
Entity #13 | Chains: M,Z
CYTOCHROME C OXIDASE protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 45 405
95 % 30 45 560 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 30 45 588
70 % 30 45 621
50 % 30 45 669
40 % 30 45 704
30 % 30 45 698
Entity #2 | Chains: B,O
CYTOCHROME C OXIDASE protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 44 400
95 % 31 46 532 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 31 46 560
70 % 31 46 593
50 % 31 46 634
40 % 31 46 667
30 % 38 58 532
Entity #3 | Chains: C,P
CYTOCHROME C OXIDASE protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 4428
95 % 31 46 531 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 31 46 559
70 % 31 46 592
50 % 31 46 633
40 % 31 50 617
30 % 31 50 603
Entity #4 | Chains: D,Q
CYTOCHROME C OXIDASE protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 43 414
95 % 30 45 552 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 30 45 580
70 % 30 45 614
50 % 30 45 661
40 % 30 45 693
30 % 30 45 689
Entity #5 | Chains: E,R
CYTOCHROME C OXIDASE protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 45 402
95 % 30 45 555 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 30 45 583
70 % 30 45 616
50 % 30 45 664
40 % 30 45 698
30 % 30 45 692
Entity #6 | Chains: F,S
CYTOCHROME C OXIDASE protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 43 415
95 % 30 45 556 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 30 45 584
70 % 30 45 617
50 % 30 45 665
40 % 30 45 699
30 % 30 45 693
Entity #7 | Chains: G,T
CYTOCHROME C OXIDASE protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 43 416
95 % 30 45 557 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 0.9
PDBFlex
90 % 30 45 585
70 % 30 45 618
50 % 30 45 666
40 % 30 45 700
30 % 30 45 694
Entity #8 | Chains: H,U
CYTOCHROME C OXIDASE protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 46 387
95 % 31 46 536 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 31 46 562
70 % 31 46 595
50 % 31 46 639
40 % 31 46 671
30 % 31 46 663
Entity #9 | Chains: I,V
CYTOCHROME C OXIDASE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 44 403
95 % 31 46 537 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 31 46 563
70 % 31 46 596
50 % 31 46 641
40 % 31 46 673
30 % 31 46 665

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures