Sequence Similarity Clusters for the Entities in PDB 1OCR

Entity #1 | Chains: A,N
CYTOCHROME C OXIDASE protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 41 400
95 % 30 43 541 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 30 43 574
70 % 30 43 606
50 % 39 57 491
40 % 39 57 528
30 % 39 57 529
Entity #10 | Chains: J,W
CYTOCHROME C OXIDASE protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 40 432
95 % 29 42 580 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.3
PDBFlex
90 % 29 42 609
70 % 29 42 645
50 % 29 42 688
40 % 29 42 719
30 % 29 42 718
Entity #11 | Chains: K,X
CYTOCHROME C OXIDASE protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 39 452
95 % 28 39 625 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 28 39 653
70 % 28 39 697
50 % 28 39 745
40 % 28 39 774
30 % 28 39 768
Entity #12 | Chains: L,Y
CYTOCHROME C OXIDASE protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 42 411
95 % 29 42 581 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 29 42 610
70 % 29 42 646
50 % 29 42 689
40 % 29 42 720
30 % 29 42 719
Entity #13 | Chains: M,Z
CYTOCHROME C OXIDASE protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 42 412
95 % 29 42 582 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 29 42 611
70 % 29 42 647
50 % 29 42 690
40 % 29 42 721
30 % 29 42 720
Entity #2 | Chains: B,O
CYTOCHROME C OXIDASE protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 41 406
95 % 30 43 549 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 30 43 583
70 % 30 43 614
50 % 30 43 658
40 % 30 43 687
30 % 37 54 539
Entity #3 | Chains: C,P
CYTOCHROME C OXIDASE protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 4173
95 % 30 43 548 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 30 43 580
70 % 30 43 612
50 % 30 43 655
40 % 30 46 639
30 % 30 46 635
Entity #4 | Chains: D,Q
CYTOCHROME C OXIDASE protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 40 427
95 % 29 42 576 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 29 42 605
70 % 29 42 641
50 % 29 42 683
40 % 29 42 712
30 % 29 42 711
Entity #5 | Chains: E,R
CYTOCHROME C OXIDASE protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 42 409
95 % 29 42 577 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 29 42 606
70 % 29 42 642
50 % 29 42 685
40 % 29 42 714
30 % 29 42 714
Entity #6 | Chains: F,S
CYTOCHROME C OXIDASE protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 40 429
95 % 29 42 578 Flexibility: No
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 29 42 607
70 % 29 42 643
50 % 29 42 686
40 % 29 42 715
30 % 29 42 715
Entity #7 | Chains: G,T
CYTOCHROME C OXIDASE protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 40 430
95 % 29 42 579 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 0.8
PDBFlex
90 % 29 42 608
70 % 29 42 644
50 % 29 42 687
40 % 29 42 717
30 % 29 42 716
Entity #8 | Chains: H,U
CYTOCHROME C OXIDASE protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 43 392
95 % 30 43 561 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 30 43 591
70 % 30 43 622
50 % 30 43 664
40 % 30 43 692
30 % 30 43 689
Entity #9 | Chains: I,V
CYTOCHROME C OXIDASE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 41 410
95 % 30 43 562 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 30 43 592
70 % 30 43 623
50 % 30 43 665
40 % 30 43 693
30 % 30 43 690

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.