Sequence Similarity Clusters for the Entities in PDB 1OCO

Entity #1 | Chains: A,N
CYTOCHROME C OXIDASE protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 46 423
95 % 38 46 539 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 38 46 566
70 % 38 46 605
50 % 51 62 475
40 % 51 62 528
30 % 51 62 528
Entity #10 | Chains: J,W
CYTOCHROME C OXIDASE protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 42 484
95 % 37 45 564 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 37 45 591
70 % 37 45 633
50 % 37 45 677
40 % 37 45 714
30 % 37 45 715
Entity #11 | Chains: K,X
CYTOCHROME C OXIDASE protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 40 501
95 % 36 40 628 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 36 40 652
70 % 36 40 703
50 % 36 40 762
40 % 36 40 794
30 % 36 40 796
Entity #12 | Chains: L,Y
CYTOCHROME C OXIDASE protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 45 438
95 % 37 45 561 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 37 45 588
70 % 37 45 629
50 % 37 45 672
40 % 37 45 710
30 % 37 45 711
Entity #13 | Chains: M,Z
CYTOCHROME C OXIDASE protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 45 439
95 % 37 45 562 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 37 45 589
70 % 37 45 630
50 % 37 45 673
40 % 37 45 711
30 % 37 45 712
Entity #2 | Chains: B,O
CYTOCHROME C OXIDASE protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 44 442
95 % 38 46 546 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 38 46 571
70 % 38 46 612
50 % 38 46 655
40 % 38 46 692
30 % 48 59 545
Entity #3 | Chains: C,P
CYTOCHROME C OXIDASE protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 44 448
95 % 38 46 547 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 38 46 572
70 % 38 46 613
50 % 38 46 656
40 % 39 50 642
30 % 39 50 637
Entity #4 | Chains: D,Q
CYTOCHROME C OXIDASE protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 40 500
95 % 37 45 567 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.5
PDBFlex
90 % 37 45 596
70 % 37 45 638
50 % 37 45 680
40 % 37 45 719
30 % 37 45 720
Entity #5 | Chains: E,R
CYTOCHROME C OXIDASE protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 45 444
95 % 37 45 566 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 37 45 595
70 % 37 45 637
50 % 37 45 679
40 % 37 45 718
30 % 37 45 719
Entity #6 | Chains: F,S
CYTOCHROME C OXIDASE protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 45 443
95 % 37 45 565 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 37 45 594
70 % 37 45 636
50 % 37 45 678
40 % 37 45 716
30 % 37 45 718
Entity #7 | Chains: G,T
CYTOCHROME C OXIDASE protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 45 441
95 % 37 45 563 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.0
PDBFlex
90 % 37 45 590
70 % 37 45 632
50 % 37 45 675
40 % 37 45 712
30 % 37 45 713
Entity #8 | Chains: H,U
CYTOCHROME C OXIDASE protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 46 426
95 % 38 46 543 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 38 46 569
70 % 38 46 611
50 % 38 46 654
40 % 38 46 689
30 % 38 46 692
Entity #9 | Chains: I,V
CYTOCHROME C OXIDASE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 45 437
95 % 38 46 535 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 38 46 563
70 % 38 46 603
50 % 38 46 646
40 % 38 46 686
30 % 38 46 684

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures