Sequence Similarity Clusters for the Entities in PDB 1OCO

Entity #1 | Chains: A,N
CYTOCHROME C OXIDASE protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 43 388
95 % 37 45 522 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 37 45 556
70 % 37 45 598
50 % 49 60 473
40 % 49 60 508
30 % 49 60 508
Entity #10 | Chains: J,W
CYTOCHROME C OXIDASE protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 42 417
95 % 36 44 558 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.3
PDBFlex
90 % 36 44 592
70 % 36 44 627
50 % 36 44 672
40 % 36 44 701
30 % 36 44 698
Entity #11 | Chains: K,X
CYTOCHROME C OXIDASE protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 39 458
95 % 35 39 634 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 39 663
70 % 35 39 710
50 % 35 39 760
40 % 35 39 794
30 % 35 39 785
Entity #12 | Chains: L,Y
CYTOCHROME C OXIDASE protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 44 396
95 % 36 44 559 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 36 44 594
70 % 36 44 628
50 % 36 44 673
40 % 36 44 702
30 % 36 44 699
Entity #13 | Chains: M,Z
CYTOCHROME C OXIDASE protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 44 397
95 % 36 44 560 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 36 44 595
70 % 36 44 629
50 % 36 44 674
40 % 36 44 703
30 % 36 44 700
Entity #2 | Chains: B,O
CYTOCHROME C OXIDASE protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 43 391
95 % 37 45 526 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 37 45 560
70 % 37 45 603
50 % 37 45 645
40 % 37 45 674
30 % 46 57 532
Entity #3 | Chains: C,P
CYTOCHROME C OXIDASE protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 4307
95 % 37 45 524 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 45 559
70 % 37 45 602
50 % 37 45 644
40 % 38 49 624
30 % 38 49 615
Entity #4 | Chains: D,Q
CYTOCHROME C OXIDASE protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 42 413
95 % 36 44 553 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 36 44 586
70 % 36 44 621
50 % 36 44 668
40 % 36 44 697
30 % 36 44 693
Entity #5 | Chains: E,R
CYTOCHROME C OXIDASE protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 44 393
95 % 36 44 555 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 36 44 589
70 % 36 44 624
50 % 36 44 669
40 % 36 44 698
30 % 36 44 694
Entity #6 | Chains: F,S
CYTOCHROME C OXIDASE protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 42 414
95 % 36 44 556 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 36 44 590
70 % 36 44 625
50 % 36 44 670
40 % 36 44 699
30 % 36 44 696
Entity #7 | Chains: G,T
CYTOCHROME C OXIDASE protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 42 416
95 % 36 44 557 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 0.9
PDBFlex
90 % 36 44 591
70 % 36 44 626
50 % 36 44 671
40 % 36 44 700
30 % 36 44 697
Entity #8 | Chains: H,U
CYTOCHROME C OXIDASE protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 45 377
95 % 37 45 532 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 37 45 566
70 % 37 45 608
50 % 37 45 650
40 % 37 45 679
30 % 37 45 678
Entity #9 | Chains: I,V
CYTOCHROME C OXIDASE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 43 395
95 % 37 45 533 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 37 45 567
70 % 37 45 609
50 % 37 45 651
40 % 37 45 680
30 % 37 45 679

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.