Sequence Similarity Clusters for the Entities in PDB 1OCC

Entity #1 | Chains: A,N
CYTOCHROME C OXIDASE protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 46 423
95 % 36 46 539 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 36 46 566
70 % 36 46 605
50 % 49 62 476
40 % 49 62 529
30 % 49 62 530
Entity #10 | Chains: J,W
CYTOCHROME C OXIDASE protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 42 485
95 % 35 45 564 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 35 45 592
70 % 35 45 635
50 % 35 45 678
40 % 35 45 716
30 % 35 45 719
Entity #11 | Chains: K,X
CYTOCHROME C OXIDASE protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 40 501
95 % 34 40 628 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 34 40 653
70 % 34 40 704
50 % 34 40 762
40 % 34 40 796
30 % 34 40 797
Entity #12 | Chains: L,Y
CYTOCHROME C OXIDASE protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 45 438
95 % 35 45 561 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 35 45 589
70 % 35 45 631
50 % 35 45 673
40 % 35 45 712
30 % 35 45 715
Entity #13 | Chains: M,Z
CYTOCHROME C OXIDASE protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 45 439
95 % 35 45 562 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 45 590
70 % 35 45 632
50 % 35 45 674
40 % 35 45 713
30 % 35 45 716
Entity #2 | Chains: B,O
CYTOCHROME C OXIDASE protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 44 442
95 % 36 46 546 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 36 46 571
70 % 36 46 614
50 % 36 46 656
40 % 36 46 693
30 % 46 59 547
Entity #3 | Chains: C,P
CYTOCHROME C OXIDASE protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 44 448
95 % 36 46 547 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 36 46 572
70 % 36 46 615
50 % 36 46 657
40 % 37 50 643
30 % 37 50 639
Entity #4 | Chains: D,Q
CYTOCHROME C OXIDASE protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 40 500
95 % 35 45 567 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.5
PDBFlex
90 % 35 45 596
70 % 35 45 640
50 % 35 45 681
40 % 35 45 720
30 % 35 45 724
Entity #5 | Chains: E,R
CYTOCHROME C OXIDASE protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 45 444
95 % 35 45 566 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 35 45 595
70 % 35 45 639
50 % 35 45 680
40 % 35 45 719
30 % 35 45 723
Entity #6 | Chains: F,S
CYTOCHROME C OXIDASE protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 45 443
95 % 35 45 565 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 35 45 594
70 % 35 45 638
50 % 35 45 679
40 % 35 45 718
30 % 35 45 722
Entity #7 | Chains: G,T
CYTOCHROME C OXIDASE protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 45 441
95 % 35 45 563 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.0
PDBFlex
90 % 35 45 591
70 % 35 45 634
50 % 35 45 676
40 % 35 45 714
30 % 35 45 717
Entity #8 | Chains: H,U
CYTOCHROME C OXIDASE protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 46 426
95 % 36 46 543 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 36 46 569
70 % 36 46 611
50 % 36 46 654
40 % 36 46 690
30 % 36 46 695
Entity #9 | Chains: I,V
CYTOCHROME C OXIDASE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 45 437
95 % 36 46 535 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 36 46 563
70 % 36 46 603
50 % 36 46 646
40 % 36 46 686
30 % 36 46 687

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures