Sequence Similarity Clusters for the Entities in PDB 1OC0

Entity #1 | Chains: A
PLASMINOGEN ACTIVATOR INHIBITOR-1 protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 4003
95 % 6 21 1263 Flexibility: Low
Max RMSD: 10.1, Avg RMSD: 2.9
PDBFlex
90 % 6 21 1287
70 % 7 22 1307
50 % 7 22 1364
40 % 70 132 259
30 % 84 193 182
Entity #2 | Chains: B
VITRONECTIN protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 25435
95 % 1 3 22456
90 % 1 3 21753
70 % 1 3 19875
50 % 1 3 17148
40 % 1 3 15165
30 % 1 3 12701

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures