Sequence Similarity Clusters for the Entities in PDB 1OC0

Entity #1 | Chains: A
PLASMINOGEN ACTIVATOR INHIBITOR-1 protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 3075
95 % 6 21 1157 Flexibility: Low
Max RMSD: 10.1, Avg RMSD: 2.7
PDBFlex
90 % 6 21 1187
70 % 7 22 1188
50 % 7 22 1236
40 % 10 26 1083
30 % 71 178 179
Entity #2 | Chains: B
VITRONECTIN protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28981
95 % 1 3 24029
90 % 1 3 23265
70 % 1 3 21280
50 % 1 3 18471
40 % 1 3 16451
30 % 1 3 14106

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.