Sequence Similarity Clusters for the Entities in PDB 1OBY

Entity #1 | Chains: A,B
SYNTENIN 1 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 16333
95 % 4 4 15266 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 4 4 14994
70 % 4 4 14051
50 % 4 4 12466
40 % 4 4 11291
30 % 4 4 9813
Entity #2 | Chains: P,Q
SYNDECAN-4 protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures