Sequence Similarity Clusters for the Entities in PDB 1OBX

Entity #1 | Chains: A
SYNTENIN 1 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 17420
95 % 3 4 16159 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 4 15799
70 % 3 4 14716
50 % 3 4 12971
40 % 3 4 11636
30 % 3 4 9873
Entity #2 | Chains: B
INTERLEUKIN 5 RECEPTOR ALPHA protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1R6J 1 A Syntenin 1 PDZ2 domain (residues 197-273) 9606
2 1NTE 1 A Syntenin 1 PDZ 2 9606
3 1OBX 1 A SYNTENIN 1 PDZ2, RESIDUES 197-270 9606
4 1OBY 1 A, B SYNTENIN 1 PDZ2, RESIDUES 197-270 9606