Sequence Similarity Clusters for the Entities in PDB 1OBX

Entity #1 | Chains: A
SYNTENIN 1 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 16716
95 % 3 4 15580 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 3 4 15295
70 % 3 4 14321
50 % 3 4 12690
40 % 3 4 11487
30 % 3 4 9983
Entity #2 | Chains: B
INTERLEUKIN 5 RECEPTOR ALPHA protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures