Sequence Similarity Clusters for the Entities in PDB 1OB1

Entity #1 | Chains: A,D
ANTIBODY, HEAVY CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42208
95 % 6 8 6030 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 103 148 144
70 % 2067 2479 1
50 % 4194 5021 1
40 % 4194 5021 1
30 % 5011 5951 1
Entity #2 | Chains: B,E
ANTIBODY, LIGHT CHAIN protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41794
95 % 1 1 31910 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 30652
70 % 2025 2429 2
50 % 4195 5021 1
40 % 4195 5021 1
30 % 5012 5951 1
Entity #3 | Chains: C,F
MAJOR MEROZOITE SURFACE PROTEIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 30634
95 % 1 2 25342 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 2 24493
70 % 1 2 22240
50 % 3 7 6108
40 % 3 7 5715
30 % 3 7 5136

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures