Sequence Similarity Clusters for the Entities in PDB 1OB1

Entity #1 | Chains: A,D
ANTIBODY, HEAVY CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39359
95 % 5 6 10124 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 101 145 141
70 % 1559 1828 2
50 % 3800 4501 1
40 % 3800 4501 1
30 % 4496 5303 1
Entity #2 | Chains: B,E
ANTIBODY, LIGHT CHAIN protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38968
95 % 1 1 29834 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 28699
70 % 1837 2178 1
50 % 3801 4501 1
40 % 3801 4501 1
30 % 4497 5303 1
Entity #3 | Chains: C,F
MAJOR MEROZOITE SURFACE PROTEIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28484
95 % 1 2 23604 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 2 22861
70 % 1 2 20903
50 % 3 7 5694
40 % 3 7 5330
30 % 3 7 4798

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.