Sequence Similarity Clusters for the Entities in PDB 1OB1

Entity #1 | Chains: A,D
ANTIBODY, HEAVY CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41592
95 % 6 8 5930 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 103 148 140
70 % 2018 2416 1
50 % 4093 4892 1
40 % 4093 4892 1
30 % 4848 5759 1
Entity #2 | Chains: B,E
ANTIBODY, LIGHT CHAIN protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41184
95 % 1 1 31463 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 30227
70 % 1976 2366 2
50 % 4094 4892 1
40 % 4094 4892 1
30 % 4849 5759 1
Entity #3 | Chains: C,F
MAJOR MEROZOITE SURFACE PROTEIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 30178
95 % 1 2 24971 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 2 24141
70 % 1 2 21939
50 % 3 7 6014
40 % 3 7 5630
30 % 3 7 5054

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures