Sequence Similarity Clusters for the Entities in PDB 1OB1

Entity #1 | Chains: A,D
ANTIBODY, HEAVY CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40757
95 % 5 6 10510 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 101 145 144
70 % 1944 2329 1
50 % 3944 4717 1
40 % 3944 4717 1
30 % 4688 5571 1
Entity #2 | Chains: B,E
ANTIBODY, LIGHT CHAIN protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40360
95 % 1 1 30881 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 29690
70 % 1905 2282 2
50 % 3945 4717 1
40 % 3945 4717 1
30 % 4689 5571 1
Entity #3 | Chains: C,F
MAJOR MEROZOITE SURFACE PROTEIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29570
95 % 1 2 24498 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 2 23709
70 % 1 2 21573
50 % 3 7 5910
40 % 3 7 5535
30 % 3 7 4972

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.