Sequence Similarity Clusters for the Entities in PDB 1OAZ

Entity #1 | Chains: A,B
THIOREDOXIN 1 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46009
95 % 1 1 34465 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 32922
70 % 47 57 401
50 % 136 185 129
40 % 148 200 130
30 % 164 236 120
Entity #2 | Chains: H,J
IMMUNOGLOBULIN E protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 4435
95 % 6 8 3819 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.9
PDBFlex
90 % 9 11 2922
70 % 49 85 260
50 % 410 580 7
40 % 658 933 5
30 % 734 1061 7
Entity #3 | Chains: L,N
IMMUNOGLOBULIN E protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 4436
95 % 10 12 2209 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 11 13 2179
70 % 11 13 2172
50 % 211 308 21
40 % 659 933 5
30 % 735 1061 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures