Sequence Similarity Clusters for the Entities in PDB 1OAZ

Entity #1 | Chains: A,B
THIOREDOXIN 1 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46750
95 % 1 1 34959 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 33383
70 % 47 57 412
50 % 136 185 131
40 % 149 201 130
30 % 165 237 123
Entity #2 | Chains: H,J
IMMUNOGLOBULIN E protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 4524
95 % 6 8 3892 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.9
PDBFlex
90 % 9 11 2970
70 % 49 85 267
50 % 419 594 7
40 % 667 948 5
30 % 743 1077 7
Entity #3 | Chains: L,N
IMMUNOGLOBULIN E protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 4525
95 % 10 12 2257 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 11 13 2226
70 % 11 13 2226
50 % 211 309 23
40 % 668 948 5
30 % 744 1077 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures