Sequence Similarity Clusters for the Entities in PDB 1OAZ

Entity #1 | Chains: A,B
THIOREDOXIN 1 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47300
95 % 1 1 35361 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 33754
70 % 47 57 427
50 % 137 186 134
40 % 150 202 131
30 % 166 238 125
Entity #2 | Chains: H,J
IMMUNOGLOBULIN E protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 4602
95 % 6 8 3940 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.9
PDBFlex
90 % 9 11 3007
70 % 48 86 268
50 % 420 599 6
40 % 667 956 5
30 % 743 1085 7
Entity #3 | Chains: L,N
IMMUNOGLOBULIN E protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 4603
95 % 10 12 2293 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 11 13 2264
70 % 11 13 2259
50 % 210 312 23
40 % 668 956 5
30 % 744 1085 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures