Sequence Similarity Clusters for the Entities in PDB 1OAY

Entity #1 | Chains: H,J
IMMUNOGLOBULIN E protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 24346
95 % 7 8 3940
90 % 10 11 3007
70 % 49 86 268
50 % 424 599 6
40 % 674 956 5
30 % 751 1085 7
Entity #2 | Chains: L,M,N,O
IMMUNOGLOBULIN E protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 10140
95 % 11 12 2293 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 12 13 2264
70 % 12 13 2259
50 % 211 312 23
40 % 675 956 5
30 % 752 1085 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures