Sequence Similarity Clusters for the Entities in PDB 1OAY

Entity #1 | Chains: H,J
IMMUNOGLOBULIN E protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 23815
95 % 7 8 3854
90 % 10 11 2938
70 % 50 85 265
50 % 415 583 7
40 % 666 936 5
30 % 743 1065 7
Entity #2 | Chains: L,M,N,O
IMMUNOGLOBULIN E protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 9883
95 % 11 12 2231 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 12 13 2200
70 % 12 13 2197
50 % 212 308 22
40 % 667 936 5
30 % 744 1065 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures