Sequence Similarity Clusters for the Entities in PDB 1OAY

Entity #1 | Chains: H,I,J,K
IMMUNOGLOBULIN E protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 9297
95 % 7 8 2854 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.8
PDBFlex
90 % 10 11 2251
70 % 48 82 248
50 % 373 525 8
40 % 621 866 5
30 % 696 992 7
Entity #2 | Chains: L,M,N,O
IMMUNOGLOBULIN E protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 9369
95 % 11 12 2100 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 12 13 2074
70 % 12 13 2077
50 % 209 296 22
40 % 622 866 5
30 % 697 992 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.