Sequence Similarity Clusters for the Entities in PDB 1OAY

Entity #1 | Chains: H,J
IMMUNOGLOBULIN E protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 23437
95 % 7 8 3795
90 % 10 11 2902
70 % 50 85 257
50 % 410 576 7
40 % 661 929 5
30 % 737 1056 7
Entity #2 | Chains: L,M,N,O
IMMUNOGLOBULIN E protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 9733
95 % 11 12 2194 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 12 13 2164
70 % 12 13 2154
50 % 212 308 21
40 % 662 929 5
30 % 738 1056 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.