Sequence Similarity Clusters for the Entities in PDB 1OAX

Entity #1 | Chains: H,J
IMMUNOGLOBULIN E protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23972
95 % 8 8 3882 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.9
PDBFlex
90 % 11 11 2964
70 % 54 85 266
50 % 439 591 7
40 % 696 945 5
30 % 774 1074 7
Entity #2 | Chains: L,M,N,O
IMMUNOGLOBULIN E protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 9943
95 % 12 12 2252 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 13 13 2223
70 % 13 13 2223
50 % 218 309 23
40 % 697 945 5
30 % 775 1074 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures