Sequence Similarity Clusters for the Entities in PDB 1OAU

Entity #1 | Chains: H,I,J,K
IMMUNOGLOBULIN E protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 4524
95 % 2 8 3892 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.9
PDBFlex
90 % 2 11 2970
70 % 17 85 267
50 % 176 594 7
40 % 272 948 5
30 % 305 1077 7
Entity #2 | Chains: L,M,N,O
IMMUNOGLOBULIN E protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 4525
95 % 2 12 2257 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 3 13 2226
70 % 3 13 2226
50 % 89 309 23
40 % 273 948 5
30 % 306 1077 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures