Sequence Similarity Clusters for the Entities in PDB 1OAQ

Entity #1 | Chains: H
HEAVY CHAIN protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 4892
95 % 1 8 3831 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.9
PDBFlex
90 % 1 11 2914
70 % 4 87 260
50 % 30 609 6
40 % 86 5750 1
30 % 123 7168 1
Entity #2 | Chains: L
LIGHT CHAIN protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 33050
95 % 1 12 2308
90 % 1 12 2378
70 % 1 13 2230
50 % 12 317 23
40 % 13 361 26
30 % 124 7168 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures