Sequence Similarity Clusters for the Entities in PDB 1OAQ

Entity #1 | Chains: H
HEAVY CHAIN protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 4482
95 % 1 8 3854 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.9
PDBFlex
90 % 1 11 2938
70 % 4 85 265
50 % 28 583 7
40 % 40 936 5
30 % 47 1065 7
Entity #2 | Chains: L
LIGHT CHAIN protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 4483
95 % 1 12 2231
90 % 1 13 2200
70 % 1 13 2197
50 % 12 308 22
40 % 41 936 5
30 % 48 1065 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures