Sequence Similarity Clusters for the Entities in PDB 1OAP

Entity #1 | Chains: A
PEPTIDOGLYCAN-ASSOCIATED LIPOPROTEIN protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 7749
95 % 3 3 7840 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 3 7771
70 % 3 3 8041
50 % 4 6 5764
40 % 4 6 5369
30 % 10 13 935

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures