Sequence Similarity Clusters for the Entities in PDB 1OAK

Entity #1 | Chains: L
NMC-4 IGG1 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 30993
95 % 14 54 583 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 21 68 401
70 % 853 2519 1
50 % 1747 5107 1
40 % 2027 5756 1
30 % 2468 7175 1
Entity #2 | Chains: H
NMC-4 IGG1 protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53741
95 % 2 2 30500 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 3 11 6312
70 % 845 2478 2
50 % 1748 5107 1
40 % 2028 5756 1
30 % 2469 7175 1
Entity #3 | Chains: A
VON WILLEBRAND FACTOR protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 20946
95 % 5 14 3664 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 5 14 3737
70 % 5 15 3456
50 % 5 15 3376
40 % 5 15 3258
30 % 5 15 3017

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures