Sequence Similarity Clusters for the Entities in PDB 1OAK

Entity #1 | Chains: L
NMC-4 IGG1 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39635
95 % 14 52 554 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 21 66 372
70 % 613 1841 2
50 % 1535 4537 1
40 % 1535 4537 1
30 % 1716 5342 1
Entity #2 | Chains: H
NMC-4 IGG1 protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58115
95 % 2 2 29698
90 % 2 9 7494
70 % 741 2197 1
50 % 1536 4537 1
40 % 1536 4537 1
30 % 1717 5342 1
Entity #3 | Chains: A
VON WILLEBRAND FACTOR protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10171
95 % 5 14 3447 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 5 14 3497
70 % 5 15 3213
50 % 5 15 3140
40 % 5 15 3055
30 % 5 15 2866

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.