Sequence Similarity Clusters for the Entities in PDB 1OAK

Entity #1 | Chains: L
NMC-4 IGG1 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 37367
95 % 14 49 542
90 % 21 63 361
70 % 572 1704 2
50 % 1418 4154 1
40 % 1418 4155 1
30 % 1572 4901 1
Entity #2 | Chains: H
NMC-4 IGG1 protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54948
95 % 2 2 27987
90 % 2 9 7026
70 % 684 2010 1
50 % 1419 4154 1
40 % 1419 4155 1
30 % 1573 4901 1
Entity #3 | Chains: A
VON WILLEBRAND FACTOR protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9569
95 % 5 14 3254
90 % 5 14 3303
70 % 5 15 3040
50 % 5 15 2971
40 % 5 15 2891
30 % 5 15 2715

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.