Sequence Similarity Clusters for the Entities in PDB 1OAK

Entity #1 | Chains: L
NMC-4 IGG1 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 41439
95 % 14 54 569
90 % 21 68 377
70 % 803 2392 1
50 % 1644 4843 1
40 % 1644 4843 1
30 % 1845 5705 1
Entity #2 | Chains: H
NMC-4 IGG1 protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60573
95 % 2 2 31019
90 % 3 11 5882
70 % 793 2342 2
50 % 1645 4843 1
40 % 1645 4843 1
30 % 1846 5705 1
Entity #3 | Chains: A
VON WILLEBRAND FACTOR protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 10651
95 % 5 14 3610
90 % 5 14 3660
70 % 5 15 3362
50 % 5 15 3277
40 % 5 15 3183
30 % 5 15 2988

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures