Sequence Similarity Clusters for the Entities in PDB 1OAK

Entity #1 | Chains: L
NMC-4 IGG1 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 37839
95 % 14 49 582
90 % 21 63 365
70 % 579 1729 2
50 % 1440 4220 1
40 % 1440 4221 1
30 % 1596 4972 1
Entity #2 | Chains: H
NMC-4 IGG1 protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55567
95 % 2 2 28338
90 % 2 9 7109
70 % 694 2041 1
50 % 1441 4220 1
40 % 1441 4221 1
30 % 1597 4972 1
Entity #3 | Chains: A
VON WILLEBRAND FACTOR protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9691
95 % 5 14 3310
90 % 5 14 3363
70 % 5 15 3080
50 % 5 15 3009
40 % 5 15 2929
30 % 5 15 2754

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.