Sequence Similarity Clusters for the Entities in PDB 1O9K

Entity #1 | Chains: A,C,E,G
RETINOBLASTOMA-ASSOCIATED PROTEIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 14948
95 % 2 2 14056 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.6
PDBFlex
90 % 2 2 13806
70 % 2 2 12951
50 % 2 2 11524
40 % 2 2 10441
30 % 2 2 9065
Entity #2 | Chains: B,D,F,H
RETINOBLASTOMA-ASSOCIATED PROTEIN protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 15288
95 % 2 2 14323 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 2 2 14047
70 % 2 2 13175
50 % 2 2 11724
40 % 2 2 10631
30 % 2 2 9227
Entity #3 | Chains: P,Q,R,S
TRANSCRIPTION FACTOR E2F1 protein, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.