Sequence Similarity Clusters for the Entities in PDB 1O9K

Entity #1 | Chains: A,C,E,G
RETINOBLASTOMA-ASSOCIATED PROTEIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 15699
95 % 2 2 14702 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.6
PDBFlex
90 % 2 2 14457
70 % 2 2 13559
50 % 2 2 12046
40 % 2 2 10911
30 % 2 2 9483
Entity #2 | Chains: B,D,F,H
RETINOBLASTOMA-ASSOCIATED PROTEIN protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 16055
95 % 2 2 14982 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 2 2 14707
70 % 2 2 13789
50 % 2 2 12248
40 % 2 2 11103
30 % 2 2 9647
Entity #3 | Chains: P,Q,R,S
TRANSCRIPTION FACTOR E2F1 protein, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures