Sequence Similarity Clusters for the Entities in PDB 1O95

Entity #1 | Chains: A,B
TRIMETHYLAMINE DEHYDROGENASE protein, length: 729 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 7656
95 % 5 5 6608 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 5 5 6586
70 % 5 5 6426
50 % 5 5 5988
40 % 6 6 4737
30 % 6 6 4331
Entity #2 | Chains: C,E
ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 4341
95 % 8 8 5122 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 8 8 5146
70 % 8 8 5048
50 % 8 8 4834
40 % 8 8 4576
30 % 13 13 2953
Entity #3 | Chains: D,F
ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT protein, length: 320 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 7130
95 % 8 8 5095 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 8 8 5118
70 % 8 8 5014
50 % 8 8 4806
40 % 8 8 4550
30 % 16 16 2477

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures