Sequence Similarity Clusters for the Entities in PDB 1O94

Entity #1 | Chains: A,B
TRIMETHYLAMINE DEHYDROGENASE protein, length: 729 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 7788
95 % 1 5 7346 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 5 7305
70 % 1 5 7085
50 % 1 5 6556
40 % 1 6 5252
30 % 1 6 4674
Entity #2 | Chains: C,E
ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5265
95 % 6 8 5578 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 6 8 5593
70 % 6 8 5441
50 % 6 8 5144
40 % 6 8 4839
30 % 9 18 2337
Entity #3 | Chains: D,F
ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT protein, length: 320 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 8284
95 % 6 8 5579 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 6 8 5594
70 % 6 8 5442
50 % 6 8 5145
40 % 6 8 4840
30 % 9 17 2552

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3CLS 2 D Electron transfer flavoprotein subunit alpha 17
2 1O97 2 D ELECTRON TRANSFERRING FLAVOPROTEIN ALPHA-SUBUNIT 17
3 3CLU 2 D Electron transfer flavoprotein subunit alpha 17
4 3CLR 2 D Electron transfer flavoprotein subunit alpha 17
5 3CLT 2 D Electron transfer flavoprotein subunit alpha 17
6 1O94 3 D, F ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT 17
7 1O96 2 B, D, F, Z ELECTRON TRANSFERRING FLAVOPROTEIN ALPHA-SUBUNIT 17
8 1O95 3 D, F ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT 17