Sequence Similarity Clusters for the Entities in PDB 1O94

Entity #1 | Chains: A,B
TRIMETHYLAMINE DEHYDROGENASE protein, length: 729 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 6842
95 % 1 5 6988 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 5 6974
70 % 1 5 6777
50 % 1 5 6300
40 % 1 6 5045
30 % 1 6 4494
Entity #2 | Chains: C,E
ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 4964
95 % 6 8 5283 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 6 8 5318
70 % 6 8 5192
50 % 6 8 4938
40 % 6 8 4644
30 % 8 17 2330
Entity #3 | Chains: D,F
ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT protein, length: 320 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 7866
95 % 6 8 5284 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 6 8 5319
70 % 6 8 5193
50 % 6 8 4939
40 % 6 8 4645
30 % 8 16 2544

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3CLS 1 C Electron transfer flavoprotein subunit beta 17
2 1O97 1 C ELECTRON TRANSFERRING FLAVOPROTEIN BETA-SUBUNIT 17
3 3CLU 1 C Electron transfer flavoprotein subunit beta 17
4 3CLR 1 C Electron transfer flavoprotein subunit beta 17
5 3CLT 1 C Electron transfer flavoprotein subunit beta 17
6 1O94 2 C, E ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT 17
7 1O96 1 A, C, E, Q ELECTRON TRANSFERRING FLAVOPROTEIN BETA-SUBUNIT 17
8 1O95 2 C, E ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT 17