Sequence Similarity Clusters for the Entities in PDB 1O94

Entity #1 | Chains: A,B
TRIMETHYLAMINE DEHYDROGENASE protein, length: 729 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 7578
95 % 1 5 7163 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 5 7135
70 % 1 5 6939
50 % 1 5 6443
40 % 1 6 5171
30 % 1 6 4598
Entity #2 | Chains: C,E
ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5120
95 % 6 8 5428 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 6 8 5456
70 % 6 8 5331
50 % 6 8 5058
40 % 6 8 4763
30 % 8 17 2382
Entity #3 | Chains: D,F
ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT protein, length: 320 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 8073
95 % 6 8 5429 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 6 8 5457
70 % 6 8 5332
50 % 6 8 5059
40 % 6 8 4764
30 % 8 16 2607

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4L2I 2 B Electron transfer flavoprotein alpha/beta-subunit 905
2 4KPU 2 B Electron transfer flavoprotein alpha/beta-subunit 905
3 3CLS 1 C Electron transfer flavoprotein subunit beta 17
4 1O97 1 C ELECTRON TRANSFERRING FLAVOPROTEIN BETA-SUBUNIT 17
5 3CLU 1 C Electron transfer flavoprotein subunit beta 17
6 3CLR 1 C Electron transfer flavoprotein subunit beta 17
7 3CLT 1 C Electron transfer flavoprotein subunit beta 17
8 1O94 2 C, E ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT 17
9 1EFV 2 B ELECTRON TRANSFER FLAVOPROTEIN COFACTORS FAD 1 AND AMP 1 ARE NON-COVALENTLY BOUND 9606
10 2A1U 2 B Electron transfer flavoprotein beta-subunit 9606
11 1EFP 2 B, D PROTEIN (ELECTRON TRANSFER FLAVOPROTEIN) FAD AND AMP COFACTORS ARE NONCOVALENTLY BOUND 266
12 2A1T 3 S Electron transfer flavoprotein beta-subunit 9606
13 1T9G 3 S Electron transfer flavoprotein beta-subunit 9606
14 5OL2 2 B, E Electron transfer flavoprotein small subunit 1496
15 1O96 1 A, C, E, Q ELECTRON TRANSFERRING FLAVOPROTEIN BETA-SUBUNIT 17
16 6FAH 2 B, F Caffeyl-CoA reductase-Etf complex subunit CarD 1 FAD 33952 1.3.1.108 | Details
17 1O95 2 C, E ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT 17