Sequence Similarity Clusters for the Entities in PDB 1O94

Entity #1 | Chains: A,B
TRIMETHYLAMINE DEHYDROGENASE protein, length: 729 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 7018
95 % 1 5 7155 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 5 7127
70 % 1 5 6930
50 % 1 5 6437
40 % 1 6 5169
30 % 1 6 4595
Entity #2 | Chains: C,E
ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5117
95 % 6 8 5425 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 6 8 5455
70 % 6 8 5327
50 % 6 8 5057
40 % 6 8 4761
30 % 8 17 2380
Entity #3 | Chains: D,F
ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT protein, length: 320 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 8065
95 % 6 8 5426 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 6 8 5456
70 % 6 8 5328
50 % 6 8 5058
40 % 6 8 4762
30 % 8 16 2605

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3CLS 1 C Electron transfer flavoprotein subunit beta 17
2 1O97 1 C ELECTRON TRANSFERRING FLAVOPROTEIN BETA-SUBUNIT 17
3 3CLU 1 C Electron transfer flavoprotein subunit beta 17
4 3CLR 1 C Electron transfer flavoprotein subunit beta 17
5 3CLT 1 C Electron transfer flavoprotein subunit beta 17
6 1O94 2 C, E ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT 17
7 1O96 1 A, C, E, Q ELECTRON TRANSFERRING FLAVOPROTEIN BETA-SUBUNIT 17
8 1O95 2 C, E ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT 17