Sequence Similarity Clusters for the Entities in PDB 1O94

Entity #1 | Chains: A,B
TRIMETHYLAMINE DEHYDROGENASE protein, length: 729 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 7989
95 % 1 5 7527
90 % 1 5 7478
70 % 1 5 7239
50 % 1 5 6680
40 % 1 6 5352
30 % 1 6 4764
Entity #2 | Chains: C,E
ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5386
95 % 6 8 5701 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 6 8 5709
70 % 6 8 5567
50 % 6 8 5246
40 % 6 8 4929
30 % 9 18 2374
Entity #3 | Chains: D,F
ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT protein, length: 320 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 8487
95 % 6 8 5702 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 6 8 5710
70 % 6 8 5568
50 % 6 8 5247
40 % 6 8 4930
30 % 9 17 2597

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures