Sequence Similarity Clusters for the Entities in PDB 1O94

Entity #1 | Chains: A,B
TRIMETHYLAMINE DEHYDROGENASE protein, length: 729 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 7703
95 % 1 5 7288 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 5 7247
70 % 1 5 7034
50 % 1 5 6519
40 % 1 6 5224
30 % 1 6 4645
Entity #2 | Chains: C,E
ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5200
95 % 6 8 5522 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 6 8 5544
70 % 6 8 5406
50 % 6 8 5117
40 % 6 8 4813
30 % 9 18 2323
Entity #3 | Chains: D,F
ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT protein, length: 320 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 8203
95 % 6 8 5523 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 6 8 5545
70 % 6 8 5407
50 % 6 8 5118
40 % 6 8 4814
30 % 9 17 2536

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures