Sequence Similarity Clusters for the Entities in PDB 1O8F

Entity #1 | Chains: A
PECTATE LYASE C protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 14 3909
95 % 11 15 4387
90 % 11 15 4417
70 % 11 15 4330
50 % 11 15 4171
40 % 14 18 2865
30 % 16 20 2472

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3VMV 1 A Pectate lyase catalytic domain (UNP RESIDUES 37-362) 122631 4.2.2.2 | Details
2 3VMW 1 A Pectate lyase catalytic domain (UNP RESIDUES 37-362) 122631 4.2.2.2 | Details
3 2QY1 1 A, B Pectate lyase II UNP residues 24-353 339
4 2QX3 1 A, B Pectate lyase II 339 4.2.2.2 | Details
5 2QXZ 1 A, B pectate lyase II 339
6 1O88 1 A PECTATE LYASE C 556 4.2.2.2 | Details
7 1O8L 1 A PECTATE LYASE C 556 4.2.2.2 | Details
8 1AIR 1 A PECTATE LYASE C 556 4.2.2.2 | Details
9 1O8J 1 A PECTATE LYASE C 556 4.2.2.2 | Details
10 1O8G 1 A PECTATE LYASE C 556 4.2.2.2 | Details
11 1O8M 1 A PECTATE LYASE C 556 4.2.2.2 | Details
12 2PEC 1 A PECTATE LYASE C 556 4.2.2.2 | Details
13 1O8D 1 A PECTATE LYASE C 556 4.2.2.2 | Details
14 1O8K 1 A PECTATE LYASE C 556 4.2.2.2 | Details
15 1O8I 1 A PECTATE LYASE C 556 4.2.2.2 | Details
16 1O8F 1 A PECTATE LYASE C 556 4.2.2.2 | Details
17 2EWE 1 A Pectate lyase C 556 4.2.2.2 | Details
18 1O8H 1 A PECTATE LYASE C 556 4.2.2.2 | Details
19 1O8E 1 A PECTATE LYASE C 556 4.2.2.2 | Details
20 1PLU 1 A PROTEIN (PECTATE LYASE C) 556 4.2.2.2 | Details