Sequence Similarity Clusters for the Entities in PDB 1O84

Entity #1 | Chains: A,B
PEPTIDE ANTIBIOTIC AS-48 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 6496
95 % 4 5 5432 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 5 5467
70 % 4 5 5266
50 % 4 5 5003
40 % 4 5 4707
30 % 4 5 4225

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4RGD 1 A, B Bacteriocin AS-48 UNP residues 36-105 1351
2 1O82 1 A, B, C, D PEPTIDE ANTIBIOTIC AS-48 PEPTIDE LINK BETWEEN RESIDUES 1 AND 70 1351
3 1O83 1 A, B, C, D PEPTIDE ANTIBIOTIC AS-48 PEPTIDE LINK BETWEEN RESIDUES 1 AND 70 1351
4 1O84 1 A, B PEPTIDE ANTIBIOTIC AS-48 CYCLIC PROTEIN, LINK BETWEEN M1 AND W70 1351
5 1E68 1 A AS-48 PROTEIN PEPTIDE LINK BETWEEN RESIDUES 1 AND 70 BACTERIOCIN AS-48, RESIDUES 36-105 1351