Sequence Similarity Clusters for the Entities in PDB 1O84

Entity #1 | Chains: A,B
PEPTIDE ANTIBIOTIC AS-48 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 6008
95 % 4 5 5352 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 5 5373
70 % 4 5 5284
50 % 4 5 5049
40 % 4 5 4775
30 % 4 6 4125

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures