Sequence Similarity Clusters for the Entities in PDB 1O5D

Entity #1 | Chains: L
Coagulation factor VII protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 32 1366
95 % 12 32 1845 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.0
PDBFlex
90 % 12 32 1885
70 % 12 32 1902
50 % 44 74 777
40 % 44 74 816
30 % 44 74 811
Entity #2 | Chains: H
Coagulation factor VII protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 97 320
95 % 66 101 414 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.7
PDBFlex
90 % 66 101 449
70 % 66 101 481
50 % 66 101 526
40 % 1390 1863 4
30 % 1399 1885 6
Entity #3 | Chains: T
Tissue factor protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 39 989
95 % 13 40 1287 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.0
PDBFlex
90 % 13 40 1315
70 % 13 41 1281
50 % 13 41 1341
40 % 13 41 1353
30 % 13 41 1328

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures