Sequence Similarity Clusters for the Entities in PDB 1O5D

Entity #1 | Chains: L
Coagulation factor VII protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 32 1338
95 % 12 32 1799 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.0
PDBFlex
90 % 12 32 1838
70 % 12 32 1864
50 % 44 74 769
40 % 44 74 808
30 % 44 74 799
Entity #2 | Chains: H
Coagulation factor VII protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 97 308
95 % 66 101 400 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.7
PDBFlex
90 % 66 101 428
70 % 66 101 463
50 % 66 101 522
40 % 1296 1721 4
30 % 1392 1871 6
Entity #3 | Chains: T
Tissue factor protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 39 976
95 % 13 40 1273 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.0
PDBFlex
90 % 13 40 1305
70 % 13 41 1266
50 % 13 41 1326
40 % 13 41 1340
30 % 13 41 1314

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures