Sequence Similarity Clusters for the Entities in PDB 1O5D

Entity #1 | Chains: L
Coagulation factor VII protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 32 1307
95 % 12 32 1753 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.0
PDBFlex
90 % 12 32 1789
70 % 12 32 1815
50 % 44 74 757
40 % 44 74 792
30 % 44 74 783
Entity #2 | Chains: H
Coagulation factor VII protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 97 276
95 % 66 101 367 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.7
PDBFlex
90 % 66 101 391
70 % 66 101 428
50 % 66 101 507
40 % 1277 1696 4
30 % 1373 1846 6
Entity #3 | Chains: T
Tissue factor protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 39 951
95 % 13 40 1240 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.0
PDBFlex
90 % 13 40 1270
70 % 13 41 1244
50 % 13 41 1299
40 % 13 41 1311
30 % 13 41 1284

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.