Sequence Similarity Clusters for the Entities in PDB 1O5C

Entity #1 | Chains: A
Urokinase-type plasminogen activator protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 20 2666
95 % 3 20 2985
90 % 3 20 3046
70 % 3 20 3006
50 % 3 20 2951
40 % 3 20 2876
30 % 3 20 2662
Entity #2 | Chains: B
Urokinase-type plasminogen activator protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 70 560
95 % 20 119 320 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.5
PDBFlex
90 % 20 119 332
70 % 20 124 356
50 % 20 124 429
40 % 526 1898 4
30 % 526 1912 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1GJ7 1 A UROKINASE-TYPE PLASMINOGEN ACTIVATOR SHORT CHAIN 9606 3.4.21.73 | Details
2 1GJA 1 A UROKINASE-TYPE PLASMINOGEN ACTIVATOR SHORT CHAIN 9606 3.4.21.73 | Details
3 1O5C 1 A Urokinase-type plasminogen activator SHORT CHAIN 9606 3.4.21.73 | Details
4 1GJ8 1 A UROKINASE-TYPE PLASMINOGEN ACTIVATOR SHORT CHAIN 9606 3.4.21.73 | Details
5 1C5Y 1 A PROTEIN (UROKINASE-TYPE PLASMINOGEN ACTIVATOR) SHORT CHAIN 9606 3.4.21.73 | Details
6 1GJD 1 A UROKINASE-TYPE PLASMINOGEN ACTIVATOR SHORT CHAIN 9606 3.4.21.73 | Details
7 1O5A 1 A Urokinase-type plasminogen activator SHORT CHAIN 9606 3.4.21.73 | Details
8 1C5X 1 A PROTEIN (UROKINASE-TYPE PLASMINOGEN ACTIVATOR) SHORT CHAIN 9606 3.4.21.73 | Details
9 1GJC 1 A UROKINASE-TYPE PLASMINOGEN ACTIVATOR SHORT CHAIN 9606 3.4.21.73 | Details
10 1GJ9 1 A UROKINASE-TYPE PLASMINOGEN ACTIVATOR SHORT CHAIN 9606 3.4.21.73 | Details
11 1GI7 1 A UROKINASE-TYPE PLASMINOGEN ACTIVATOR SHORT CHAIN 9606 3.4.21.73 | Details
12 1GI8 1 A UROKINASE-TYPE PLASMINOGEN ACTIVATOR SHORT CHAIN 9606 3.4.21.73 | Details
13 1GI9 1 A UROKINASE-TYPE PLASMINOGEN ACTIVATOR SHORT CHAIN 9606 3.4.21.73 | Details
14 1O3P 1 A Urokinase-type plasminogen activator SHORT CHAIN 9606 3.4.21.73 | Details
15 1C5Z 1 A PROTEIN (UROKINASE-TYPE PLASMINOGEN ACTIVATOR) SHORT CHAIN 9606 3.4.21.73 | Details
16 3IG6 1 A, C Urokinase-type plasminogen activator FRAGMENT OF LIGHT CHAIN 9606 3.4.21.73 | Details
17 1O5B 1 A Urokinase-type plasminogen activator SHORT CHAIN 9606 3.4.21.73 | Details
18 1C5W 1 A PROTEIN (UROKINASE-TYPE PLASMINOGEN ACTIVATOR) SHORT CHAIN 9606 3.4.21.73 | Details
19 1GJB 1 A UROKINASE-TYPE PLASMINOGEN ACTIVATOR SHORT CHAIN 9606 3.4.21.73 | Details
20 1LMW 1 A, C UROKINASE-TYPE PLASMINOGEN ACTIVATOR 9606 3.4.21.73 | Details