Sequence Similarity Clusters for the Entities in PDB 1O4X

Entity #1 | Chains: C
5'-D(*TP*GP*TP*CP*TP*TP*TP*GP*TP*CP*AP*TP*GP*CP*TP*AP*AP*TP*G)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(*CP*AP*TP*TP*AP*GP*CP*AP*TP*GP*AP*CP*AP*AP*AP*GP*AP*CP*A)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
transcription factor Oct-1 protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66660
95 % 6 6 9432
90 % 6 6 9323
70 % 6 6 8917
50 % 10 10 3838
40 % 11 11 2492
30 % 11 11 2332
Entity #4 | Chains: B
Transcription factor SOX-2 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 26344
95 % 3 3 23202
90 % 3 3 22456
70 % 3 3 20488
50 % 9 14 4865
40 % 10 15 4253
30 % 29 46 1149

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures