POP-OUT | CLOSE

An Information Portal to 105339 Biological Macromolecular Structures

TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT
Sequence Clustering and Redundancy Reduction Results
1O4X
Sequence Clusters for the Sequence Entities in PDB 1O4X
Entity #1: Chains: C - 5'-D(*TP*GP*TP*CP*TP*TP*TP*GP*TP*CP*AP*TP*GP*CP*TP*AP*AP*TP*G)-3' dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: D - 5'-D(*CP*AP*TP*TP*AP*GP*CP*AP*TP*GP*AP*CP*AP*AP*AP*GP*AP*CP*A)-3' dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - transcription factor Oct-1 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48990
95% 6 6 7219
90% 6 6 7157
70% 6 6 6887
50% 9 9 3715
40% 10 10 2250
30% 10 10 2112
Entity #4: Chains: B - Transcription factor SOX-2 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 22505
95% 3 3 18817
90% 3 3 18263
70% 3 3 16809
50% 7 12 4328
40% 8 13 3599
30% 27 44 884
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.