Sequence Similarity Clusters for the Entities in PDB 1O4X

Entity #1 | Chains: C
5'-D(*TP*GP*TP*CP*TP*TP*TP*GP*TP*CP*AP*TP*GP*CP*TP*AP*AP*TP*G)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(*CP*AP*TP*TP*AP*GP*CP*AP*TP*GP*AP*CP*AP*AP*AP*GP*AP*CP*A)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
transcription factor Oct-1 protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68066
95 % 6 6 9672
90 % 6 6 9561
70 % 6 6 9179
50 % 10 10 3934
40 % 11 11 2557
30 % 11 11 2384
Entity #4 | Chains: B
Transcription factor SOX-2 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 27059
95 % 3 3 23849
90 % 3 3 23058
70 % 3 3 20937
50 % 9 14 4983
40 % 10 15 4375
30 % 29 46 1178

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures