Sequence Similarity Clusters for the Entities in PDB 1O4X

Entity #1 | Chains: C
5'-D(*TP*GP*TP*CP*TP*TP*TP*GP*TP*CP*AP*TP*GP*CP*TP*AP*AP*TP*G)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(*CP*AP*TP*TP*AP*GP*CP*AP*TP*GP*AP*CP*AP*AP*AP*GP*AP*CP*A)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
transcription factor Oct-1 protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56448
95 % 6 6 8378
90 % 6 6 8303
70 % 6 6 7943
50 % 9 9 4302
40 % 10 10 2563
30 % 10 10 2394
Entity #4 | Chains: B
Transcription factor SOX-2 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 26223
95 % 3 3 21744
90 % 3 3 21069
70 % 3 3 19292
50 % 9 14 4108
40 % 10 15 3635
30 % 30 47 936

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.