Sequence Similarity Clusters for the Entities in PDB 1O3T

Entity #1 | Chains: C,F
5'-D(*GP*CP*GP*AP*AP*AP*AP*AP*TP*GP*CP*GP*AP*T)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,E
5'-D(*CP*TP*AP*GP*AP*TP*CP*GP*CP*AP*TP*TP*TP*TP*TP*CP*G)-3' dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
CATABOLITE GENE ACTIVATOR PROTEIN protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 27 652
95 % 28 43 437 Flexibility: Medium
Max RMSD: 11.6, Avg RMSD: 3.7
PDBFlex
90 % 28 43 469
70 % 28 43 510
50 % 29 44 564
40 % 29 44 604
30 % 46 64 353

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.