Sequence Similarity Clusters for the Entities in PDB 1O3R

Entity #1 | Chains: B
5'-D(*AP*AP*AP*AP*AP*TP*GP*CP*GP*AP*T)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*CP*TP*AP*GP*AP*TP*CP*GP*CP*AP*TP*TP*TP*TP*T)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
CATABOLITE GENE ACTIVATOR PROTEIN protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 28 656
95 % 31 44 475 Flexibility: Medium
Max RMSD: 11.8, Avg RMSD: 4.5
PDBFlex
90 % 31 44 508
70 % 31 44 545
50 % 32 45 575
40 % 32 45 611
30 % 51 65 374

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures