Sequence Similarity Clusters for the Entities in PDB 1O3Q

Entity #1 | Chains: B
5'-D(*AP*AP*AP*AP*AP*TP*GP*TP*GP*AP*T)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*TP*TP*TP*T)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
CATABOLITE GENE ACTIVATOR PROTEIN protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 28 653
95 % 33 44 442 Flexibility: Medium
Max RMSD: 11.8, Avg RMSD: 4.5
PDBFlex
90 % 33 44 477
70 % 33 44 521
50 % 34 45 570
40 % 34 45 610
30 % 54 65 362

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.