Sequence Similarity Clusters for the Entities in PDB 1O23

Entity #1 | Chains: A,C
ALPHA-LACTALBUMIN protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 12 2342
95 % 9 12 2636 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 9 12 2706
70 % 9 12 2681
50 % 23 29 960
40 % 904 1020 9
30 % 904 1020 18
Entity #2 | Chains: B,D
BETA-1,4-GALACTOSYLTRANSFERASE protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 15 1681
95 % 14 20 1445 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 29 37 604
70 % 29 37 647
50 % 29 37 694
40 % 33 41 683
30 % 33 41 685

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures