Sequence Similarity Clusters for the Entities in PDB 1O23

Entity #1 | Chains: A,C
ALPHA-LACTALBUMIN protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 12 1996
95 % 9 12 2571 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 9 12 2620
70 % 9 12 2606
50 % 22 28 921
40 % 870 984 11
30 % 870 984 19
Entity #2 | Chains: B,D
BETA-1,4-GALACTOSYLTRANSFERASE protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 3263
95 % 14 20 1351 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.0
PDBFlex
90 % 29 37 567
70 % 29 37 607
50 % 29 37 650
40 % 33 41 641
30 % 33 41 636

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.