Sequence Similarity Clusters for the Entities in PDB 1O1D

Entity #1 | Chains: A,D,G,J,M,P
SKELETAL MUSCLE MYOSIN II protein, length: 840 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 12 592
95 % 9 15 771
90 % 9 15 797
70 % 13 19 744
50 % 44 50 441
40 % 92 101 280
30 % 117 126 234
Entity #2 | Chains: B,E,H,K,N,Q
SKELETAL MUSCLE MYOSIN II REGULATORY LIGHT CHAIN protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 11 641
95 % 8 14 803
90 % 8 14 836
70 % 10 16 835
50 % 40 47 503
40 % 307 336 34
30 % 334 363 47
Entity #3 | Chains: C,F,I,L,O,R
SKELETAL MUSCLE MYOSIN II ESSENTIAL LIGHT CHAIN protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 12 628
95 % 9 15 796
90 % 9 15 826
70 % 18 25 598
50 % 18 25 639
40 % 308 336 34
30 % 335 363 47
Entity #4 | Chains: 0,1,2,3,4,5,7,8,9,V,W,X,Y,Z
SKELETAL MUSCLE ACTIN protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 123 22
95 % 172 178 15
90 % 177 183 15
70 % 181 187 23
50 % 184 190 37
40 % 203 209 39
30 % 223 229 52

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.