Sequence Similarity Clusters for the Entities in PDB 1O1D

Entity #1 | Chains: A,D,G,J,M,P
SKELETAL MUSCLE MYOSIN II protein, length: 840 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 12 596
95 % 9 15 773
90 % 9 15 800
70 % 13 19 754
50 % 44 50 446
40 % 92 101 284
30 % 117 126 238
Entity #2 | Chains: B,E,H,K,N,Q
SKELETAL MUSCLE MYOSIN II REGULATORY LIGHT CHAIN protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 11 645
95 % 8 14 806
90 % 8 14 841
70 % 10 16 837
50 % 40 47 507
40 % 310 339 39
30 % 337 366 49
Entity #3 | Chains: C,F,I,L,O,R
SKELETAL MUSCLE MYOSIN II ESSENTIAL LIGHT CHAIN protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 12 633
95 % 9 15 799
90 % 9 15 831
70 % 18 25 610
50 % 18 25 653
40 % 311 339 39
30 % 338 366 49
Entity #4 | Chains: 0,1,2,3,4,5,7,8,9,V,W,X,Y,Z
SKELETAL MUSCLE ACTIN protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 123 23
95 % 173 179 15
90 % 178 184 15
70 % 183 189 23
50 % 186 192 36
40 % 205 211 41
30 % 225 231 53

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.