Sequence Similarity Clusters for the Entities in PDB 1O19

Entity #1 | Chains: A,D,G,J,M,S
SKELETAL MUSCLE MYOSIN II protein, length: 840 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 12 607
95 % 10 15 789
90 % 10 15 817
70 % 14 19 763
50 % 45 50 452
40 % 93 101 291
30 % 118 126 241
Entity #2 | Chains: B,E,H,K,N,T
SKELETAL MUSCLE MYOSIN II REGULATORY LIGHT CHAIN protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 11 657
95 % 9 14 822
90 % 9 14 856
70 % 11 16 848
50 % 41 47 514
40 % 314 341 42
30 % 341 368 53
Entity #3 | Chains: C,F,I,L,O,U
SKELETAL MUSCLE MYOSIN II ESSENTIAL LIGHT CHAIN protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 12 646
95 % 10 15 812
90 % 10 15 844
70 % 19 25 618
50 % 19 25 665
40 % 315 341 42
30 % 342 368 53
Entity #4 | Chains: 1,2,3,4,5,6,7,8,9,V,W,X,Y,Z
SKELETAL MUSCLE ACTIN protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 124 21
95 % 176 181 14
90 % 181 186 14
70 % 186 191 20
50 % 189 194 27
40 % 208 213 36
30 % 228 233 51

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures