Sequence Similarity Clusters for the Entities in PDB 1O18

Entity #1 | Chains: A,D,G,J,M,P
SKELETAL MUSCLE MYOSIN II protein, length: 840 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 12 714
95 % 13 15 837
90 % 13 15 865
70 % 17 19 798
50 % 86 91 361
40 % 106 111 276
30 % 130 135 234
Entity #2 | Chains: E,H,K,N,Q
SKELETAL MUSCLE MYOSIN II REGULATORY LIGHT CHAIN protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 11 763
95 % 12 14 864
90 % 12 14 895
70 % 14 16 881
50 % 44 47 539
40 % 340 361 40
30 % 407 432 43
Entity #3 | Chains: F,I,L,O,R
SKELETAL MUSCLE MYOSIN II ESSENTIAL LIGHT CHAIN protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 12 742
95 % 13 15 853
90 % 13 15 885
70 % 22 25 654
50 % 22 25 701
40 % 341 361 40
30 % 408 432 43
Entity #4 | Chains: 1,2,3,4,5,6,7,8,9,V,W,X,Y,Z
SKELETAL MUSCLE ACTIN protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 148 150 8
95 % 203 205 9
90 % 209 211 9
70 % 214 216 11
50 % 221 223 15
40 % 240 242 25
30 % 260 262 39

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures