Sequence Similarity Clusters for the Entities in PDB 1O18

Entity #1 | Chains: A,D,G,J,M,P
SKELETAL MUSCLE MYOSIN II protein, length: 840 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 12 610
95 % 13 15 795
90 % 13 15 824
70 % 17 19 765
50 % 48 50 453
40 % 96 101 294
30 % 125 130 218
Entity #2 | Chains: E,H,K,N,Q
SKELETAL MUSCLE MYOSIN II REGULATORY LIGHT CHAIN protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 11 664
95 % 12 14 829
90 % 12 14 864
70 % 14 16 854
50 % 44 47 523
40 % 323 344 38
30 % 350 371 53
Entity #3 | Chains: F,I,L,O,R
SKELETAL MUSCLE MYOSIN II ESSENTIAL LIGHT CHAIN protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 12 653
95 % 13 15 817
90 % 13 15 851
70 % 22 25 621
50 % 22 25 667
40 % 324 344 38
30 % 351 371 53
Entity #4 | Chains: 1,2,3,4,5,6,7,8,9,V,W,X,Y,Z
SKELETAL MUSCLE ACTIN protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 131 133 9
95 % 191 193 9
90 % 196 198 10
70 % 201 203 15
50 % 208 210 16
40 % 227 229 23
30 % 247 249 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures