Sequence Similarity Clusters for the Entities in PDB 1O18

Entity #1 | Chains: A,D,G,J,M,P
SKELETAL MUSCLE MYOSIN II protein, length: 840 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 12 618
95 % 13 15 803
90 % 13 15 833
70 % 17 19 777
50 % 48 50 462
40 % 96 101 300
30 % 129 134 221
Entity #2 | Chains: E,H,K,N,Q
SKELETAL MUSCLE MYOSIN II REGULATORY LIGHT CHAIN protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 11 679
95 % 12 14 845
90 % 12 14 880
70 % 14 16 867
50 % 44 47 529
40 % 336 357 41
30 % 363 384 50
Entity #3 | Chains: F,I,L,O,R
SKELETAL MUSCLE MYOSIN II ESSENTIAL LIGHT CHAIN protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 12 667
95 % 13 15 834
90 % 13 15 870
70 % 22 25 643
50 % 22 25 692
40 % 337 357 41
30 % 364 384 50
Entity #4 | Chains: 1,2,3,4,5,6,7,8,9,V,W,X,Y,Z
SKELETAL MUSCLE ACTIN protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 135 137 8
95 % 195 197 9
90 % 201 203 10
70 % 206 208 13
50 % 213 215 15
40 % 232 234 24
30 % 252 254 42

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures