Sequence Similarity Clusters for the Entities in PDB 1O0D

Entity #1 | Chains: L
Thrombin light chain protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 285 335 45
95 % 286 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 286 336 66
70 % 287 338 78
50 % 287 338 105
40 % 287 338 128
30 % 287 338 137
Entity #2 | Chains: H
Thrombin heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 247 290 57
95 % 318 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 322 381 39
70 % 334 405 45
50 % 334 405 81
40 % 1450 1696 4
30 % 1567 1846 6
Entity #3 | Chains: D
Decapeptide Hirudin Analogue protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.