Sequence Similarity Clusters for the Entities in PDB 1O0D

Entity #1 | Chains: L
Thrombin light chain protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 288 338 45
95 % 289 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 289 339 67
70 % 290 341 78
50 % 290 341 107
40 % 290 341 131
30 % 290 341 138
Entity #2 | Chains: H
Thrombin heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 247 290 59
95 % 321 377 40 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 325 384 40
70 % 337 408 46
50 % 337 408 84
40 % 1472 1721 4
30 % 1589 1871 6
Entity #3 | Chains: D
Decapeptide Hirudin Analogue protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures