Sequence Similarity Clusters for the Entities in PDB 1NZB

Entity #1 | Chains: C,G
loxP DNA dna, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,H
loxP DNA dna, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,E,F
Cre recombinase protein, length: 343 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 12 1018
95 % 21 23 823
90 % 21 23 853
70 % 21 23 889
50 % 21 23 933
40 % 21 23 954
30 % 21 23 933

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.