Sequence Similarity Clusters for the Entities in PDB 1NYX

Entity #1 | Chains: A,B
peroxisome proliferator activated receptor gamma protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 147 160 85
95 % 155 168 114 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.7
PDBFlex
90 % 155 168 118
70 % 155 168 133
50 % 204 225 103
40 % 204 225 127
30 % 894 1006 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures