Sequence Similarity Clusters for the Entities in PDB 1NYX

Entity #1 | Chains: A,B
peroxisome proliferator activated receptor gamma protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 18 1568
95 % 156 169 119 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.6
PDBFlex
90 % 156 169 122
70 % 156 169 139
50 % 206 227 107
40 % 206 227 130
30 % 1113 1261 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures