Sequence Similarity Clusters for the Entities in PDB 1NYX

Entity #1 | Chains: A,B
peroxisome proliferator activated receptor gamma protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 20 1421
95 % 163 177 121 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.6
PDBFlex
90 % 163 177 124
70 % 163 177 140
50 % 214 236 110
40 % 214 236 133
30 % 1147 1304 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures