Sequence Similarity Clusters for the Entities in PDB 1NYX

Entity #1 | Chains: A,B
peroxisome proliferator activated receptor gamma protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 20 1443
95 % 170 184 114 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.6
PDBFlex
90 % 170 184 120
70 % 170 184 136
50 % 221 243 109
40 % 221 243 131
30 % 1160 1315 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures