Sequence Similarity Clusters for the Entities in PDB 1NYX

Entity #1 | Chains: A,B
peroxisome proliferator activated receptor gamma protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 20 1390
95 % 161 175 120 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.6
PDBFlex
90 % 161 175 123
70 % 161 175 138
50 % 212 234 109
40 % 212 234 129
30 % 1140 1291 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures