Sequence Similarity Clusters for the Entities in PDB 1NYW

Entity #1 | Chains: A,B
dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase protein, length: 197 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 6109
95 % 3 4 6280 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 3 4 6271
70 % 3 4 6115
50 % 3 4 5719
40 % 3 4 5338
30 % 5 19 1172

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures