Sequence Similarity Clusters for the Entities in PDB 1NYU

Entity #1 | Chains: A,C
activin receptor protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 9546
95 % 5 5 9625 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 5 5 9517
70 % 5 5 9044
50 % 8 8 4799
40 % 8 8 4545
30 % 8 8 4160
Entity #2 | Chains: B,D
Inhibin beta A chain protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 2263
95 % 9 9 2903 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 2.1
PDBFlex
90 % 9 9 2949
70 % 9 9 2923
50 % 9 9 2889
40 % 48 49 549
30 % 61 66 411

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.