Sequence Similarity Clusters for the Entities in PDB 1NYU

Entity #1 | Chains: A,C
activin receptor protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 5991
95 % 7 7 6636 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 7 7 6618
70 % 7 7 6451
50 % 10 10 4134
40 % 10 10 3951
30 % 10 10 3658
Entity #2 | Chains: B,D
Inhibin beta A chain protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 2404
95 % 9 9 3057 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 2.2
PDBFlex
90 % 9 9 3103
70 % 9 9 3069
50 % 9 9 3022
40 % 48 49 572
30 % 61 66 437

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures