Sequence Similarity Clusters for the Entities in PDB 1NYT

Entity #1 | Chains: A,B,C,D
Shikimate 5-dehydrogenase protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19121
95 % 1 1 16891 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 1 1 16547
70 % 1 1 15399
50 % 3 6 3760
40 % 3 9 2887
30 % 8 49 478

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.