Sequence Similarity Clusters for the Entities in PDB 1NYT

Entity #1 | Chains: A,B,C,D
Shikimate 5-dehydrogenase protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20713
95 % 1 1 18200 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 1 1 17828
70 % 1 1 16553
50 % 3 6 4035
40 % 3 9 3091
30 % 8 49 512

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures