Sequence Similarity Clusters for the Entities in PDB 1NYT

Entity #1 | Chains: A,B,C,D
Shikimate 5-dehydrogenase protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20387
95 % 1 1 17933 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 1 1 17569
70 % 1 1 16324
50 % 3 6 3973
40 % 3 9 3050
30 % 8 49 509

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures