Sequence Similarity Clusters for the Entities in PDB 1NYS

Entity #1 | Chains: A,C
activin receptor protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 5981
95 % 6 7 6624 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 6 7 6605
70 % 6 7 6440
50 % 8 10 4127
40 % 8 10 3945
30 % 8 10 3651
Entity #2 | Chains: B,D
Inhibin beta A chain protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 2399
95 % 6 9 3051 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 2.2
PDBFlex
90 % 6 9 3097
70 % 6 9 3064
50 % 6 9 3017
40 % 44 49 570
30 % 55 66 436

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures