Sequence Similarity Clusters for the Entities in PDB 1NYS

Entity #1 | Chains: A,C
activin receptor protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 6075
95 % 6 7 6724 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 6 7 6714
70 % 6 7 6539
50 % 8 10 4186
40 % 8 10 3993
30 % 8 10 3700
Entity #2 | Chains: B,D
Inhibin beta A chain protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 2427
95 % 6 9 3092 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 2.2
PDBFlex
90 % 6 9 3138
70 % 6 9 3097
50 % 6 9 3054
40 % 44 49 578
30 % 55 66 441

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures