Sequence Similarity Clusters for the Entities in PDB 1NYB

Entity #1 | Chains: B
BoxB RNA rna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
Probable regulatory protein N protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 77414
95 % 1 1 54004
90 % 1 1 51162
70 % 1 1 44750
50 % 1 1 38192
40 % 1 1 33713
30 % 1 1 28646

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures