Sequence Similarity Clusters for the Entities in PDB 1NY7

Entity #1 | Chains: 1
COWPEA MOSAIC VIRUS, SMALL (S) SUBUNIT protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 21947
95 % 1 4 18989 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.7
PDBFlex
90 % 1 4 18499
70 % 1 4 17109
50 % 1 4 14850
40 % 1 4 13223
30 % 1 4 11322
Entity #2 | Chains: 2
COWPEA MOSAIC VIRUS, LARGE (L) SUBUNIT protein, length: 369 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10208
95 % 1 7 10258 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.3
PDBFlex
90 % 1 7 10132
70 % 1 7 9625
50 % 3 10 6142
40 % 3 10 5737
30 % 3 10 5152

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures