Sequence Similarity Clusters for the Entities in PDB 1NY7

Entity #1 | Chains: 1
COWPEA MOSAIC VIRUS, SMALL (S) SUBUNIT protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 17694
95 % 1 4 16303 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.7
PDBFlex
90 % 1 4 15954
70 % 1 4 14893
50 % 1 4 13119
40 % 1 4 11771
30 % 1 4 9977
Entity #2 | Chains: 2
COWPEA MOSAIC VIRUS, LARGE (L) SUBUNIT protein, length: 369 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10965
95 % 1 7 10618 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.3
PDBFlex
90 % 1 7 10475
70 % 1 7 9904
50 % 3 11 6039
40 % 3 11 5616
30 % 3 11 4945

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures