Sequence Similarity Clusters for the Entities in PDB 1NY2

Entity #1 | Chains: 1
thrombin light chain protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 265 333 44
95 % 266 334 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 266 334 64
70 % 267 336 77
50 % 267 336 100
40 % 267 336 124
30 % 267 336 136
Entity #2 | Chains: 2
thrombin Heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 232 288 55
95 % 297 372 36
90 % 300 379 38
70 % 311 403 45
50 % 311 403 78
40 % 1373 1679 4
30 % 1481 1827 6
Entity #3 | Chains: 3
Hirugen protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 4
Inhibitor peptide RPPGF protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.