Sequence Similarity Clusters for the Entities in PDB 1NY2

Entity #1 | Chains: 1
thrombin light chain protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 266 334 53
95 % 271 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 271 342 67
70 % 271 342 81
50 % 271 342 112
40 % 271 342 135
30 % 271 342 146
Entity #2 | Chains: 2
thrombin Heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 265 332 52
95 % 301 378 53 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 304 385 56
70 % 315 409 47
50 % 315 409 85
40 % 1523 1885 4
30 % 1532 1899 7
Entity #3 | Chains: 3
Hirugen protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 4
Inhibitor peptide RPPGF protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures