Sequence Similarity Clusters for the Entities in PDB 1NY2

Entity #1 | Chains: 1
thrombin light chain protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 266 335 45
95 % 267 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 267 336 66
70 % 268 338 78
50 % 268 338 105
40 % 268 338 128
30 % 268 338 137
Entity #2 | Chains: 2
thrombin Heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 233 290 57
95 % 298 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 301 381 39
70 % 312 405 45
50 % 312 405 81
40 % 1385 1696 4
30 % 1493 1846 6
Entity #3 | Chains: 3
Hirugen protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 4
Inhibitor peptide RPPGF protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.