Sequence Similarity Clusters for the Entities in PDB 1NY2

Entity #1 | Chains: 1
thrombin light chain protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 269 338 45
95 % 270 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 270 339 67
70 % 271 341 78
50 % 271 341 107
40 % 271 341 131
30 % 271 341 138
Entity #2 | Chains: 2
thrombin Heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 233 290 59
95 % 301 377 40 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 304 384 40
70 % 315 408 46
50 % 315 408 84
40 % 1406 1721 4
30 % 1514 1871 6
Entity #3 | Chains: 3
Hirugen protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 4
Inhibitor peptide RPPGF protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures