Sequence Similarity Clusters for the Entities in PDB 1NY1

Entity #1 | Chains: A,B
Probable polysaccharide deacetylase pdaA protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 9156
95 % 1 4 9397 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 4 9307
70 % 1 4 8919
50 % 2 5 7124
40 % 2 5 6616
30 % 3 7 5037

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures