Sequence Similarity Clusters for the Entities in PDB 1NWY

Entity #1 | Chains: 0
23S RIBOSOMAL RRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
ribosomal protein L13 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 19 3179
95 % 14 19 3422 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 14 19 3482
70 % 14 19 3412
50 % 14 19 3329
40 % 14 19 3213
30 % 14 19 2967
Entity #11 | Chains: I
ribosomal protein L14 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1911
95 % 16 24 2213 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 16 24 2269
70 % 162 228 85
50 % 195 388 42
40 % 298 591 21
30 % 298 591 37
Entity #12 | Chains: J
ribosomal protein L15 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1853
95 % 16 24 2156 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.9
PDBFlex
90 % 16 24 2211
70 % 16 24 2222
50 % 194 370 57
40 % 194 370 75
30 % 194 370 92
Entity #13 | Chains: K
ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 27 1639
95 % 18 27 1942 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.7
PDBFlex
90 % 18 27 1984
70 % 156 199 98
50 % 196 380 45
40 % 196 380 63
30 % 196 380 77
Entity #14 | Chains: L
ribosomal protein L17 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1931
95 % 16 24 2236 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 16 24 2294
70 % 16 24 2314
50 % 195 369 49
40 % 195 376 59
30 % 195 378 74
Entity #15 | Chains: M
ribosomal protein L18 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 22 2087
95 % 16 24 2235 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.6
PDBFlex
90 % 16 24 2293
70 % 16 24 2294
50 % 194 373 53
40 % 194 373 73
30 % 194 373 89
Entity #16 | Chains: N
ribosomal protein L19 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 19 3159
95 % 14 19 3468 Flexibility: Medium
Max RMSD: 7.0, Avg RMSD: 3.0
PDBFlex
90 % 14 19 3532
70 % 14 19 3473
50 % 14 19 3393
40 % 14 19 3259
30 % 14 19 3017
Entity #17 | Chains: O
ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 1577
95 % 16 28 1852 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 16 28 1893
70 % 16 28 1912
50 % 195 375 47
40 % 195 383 57
30 % 195 383 75
Entity #18 | Chains: P
ribosomal protein L21 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 1602
95 % 16 28 1881 Flexibility: Medium
Max RMSD: 7.9, Avg RMSD: 3.7
PDBFlex
90 % 16 28 1922
70 % 16 28 1944
50 % 161 218 120
40 % 194 370 76
30 % 194 370 93
Entity #19 | Chains: Q
ribosomal protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 28 1601
95 % 19 30 1750 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 19 30 1790
70 % 19 30 1799
50 % 19 30 1824
40 % 19 30 1810
30 % 19 30 1760
Entity #2 | Chains: 9
5S RIBOSOMAL RRNA rna, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
ribosomal protein L23 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 26 1669
95 % 16 26 1972 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 16 26 2014
70 % 16 26 2022
50 % 154 198 130
40 % 261 455 46
30 % 261 455 63
Entity #21 | Chains: S
ribosomal protein L24 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 25 1783
95 % 16 25 2110 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.6
PDBFlex
90 % 16 25 2162
70 % 16 25 2172
50 % 194 373 52
40 % 194 375 72
30 % 194 375 88
Entity #22 | Chains: T
general stress protein Ctc protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 25 2176
95 % 15 25 2475 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 1.7
PDBFlex
90 % 15 25 2553
70 % 15 25 2542
50 % 15 25 2527
40 % 15 25 2488
30 % 15 25 2329
Entity #23 | Chains: U
ribosomal protein L27 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 29 1506
95 % 17 29 1775 Flexibility: Medium
Max RMSD: 11.9, Avg RMSD: 5.0
PDBFlex
90 % 17 29 1819
70 % 51 181 174
50 % 197 375 50
40 % 197 375 69
30 % 197 375 83
Entity #24 | Chains: W
ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 26 1668
95 % 16 26 1952 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 16 26 1995
70 % 16 26 2006
50 % 16 26 2047
40 % 16 26 2020
30 % 257 441 66
Entity #25 | Chains: X
ribosomal protein L30 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1814
95 % 16 24 2124 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 16 24 2175
70 % 16 24 2186
50 % 56 196 192
40 % 195 376 70
30 % 195 376 85
Entity #26 | Chains: Y
ribosomal protein L31 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 12 3776
95 % 2 12 4142 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 2 12 4190
70 % 2 12 4114
50 % 133 232 122
40 % 133 243 140
30 % 133 244 150
Entity #27 | Chains: Z
ribosomal protein L32 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 34 1262
95 % 19 34 1490 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 19 34 1511
70 % 19 34 1527
50 % 193 366 65
40 % 197 372 74
30 % 197 372 91
Entity #28 | Chains: 1
ribosomal protein L33 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 2230
95 % 13 20 2523 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.5
PDBFlex
90 % 13 20 2597
70 % 13 20 2580
50 % 46 171 217
40 % 169 345 98
30 % 169 345 112
Entity #29 | Chains: 2
ribosomal protein L34 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 1598
95 % 16 28 1875 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 16 28 1918
70 % 49 175 176
50 % 56 198 191
40 % 56 198 210
30 % 56 198 227
Entity #3 | Chains: A
ribosomal protein L2 protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1857
95 % 16 24 2159 Flexibility: Low
Max RMSD: 7.5, Avg RMSD: 2.2
PDBFlex
90 % 16 24 2213
70 % 155 196 99
50 % 195 379 46
40 % 195 379 66
30 % 195 379 80
Entity #30 | Chains: 3
ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 1599
95 % 16 28 1876 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.7
PDBFlex
90 % 16 28 1919
70 % 16 28 1940
50 % 155 200 129
40 % 195 368 81
30 % 195 368 97
Entity #31 | Chains: 4
ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 22 2119
95 % 10 22 2422 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 10 22 2495
70 % 141 320 49
50 % 141 323 88
40 % 141 323 107
30 % 141 323 121
Entity #4 | Chains: B
ribosomal protein L3 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 27 1618
95 % 16 27 1935 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.5
PDBFlex
90 % 16 27 1976
70 % 16 27 1993
50 % 200 380 51
40 % 200 384 65
30 % 200 385 78
Entity #5 | Chains: C
ribosomal protein L4 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 29 1518
95 % 18 29 1789 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 18 29 1830
70 % 18 29 1843
50 % 157 201 128
40 % 198 377 71
30 % 198 377 87
Entity #6 | Chains: D
ribosomal protein L5 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1893
95 % 16 24 2197 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 16 24 2250
70 % 157 198 96
50 % 201 377 48
40 % 201 377 67
30 % 201 377 81
Entity #7 | Chains: E
ribosomal protein L6 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 22 2100
95 % 15 22 2402 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 15 22 2471
70 % 15 22 2464
50 % 161 231 114
40 % 194 381 61
30 % 297 581 40
Entity #8 | Chains: F
ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 16269
95 % 2 5 15112 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 5 14805
70 % 2 5 13854
50 % 124 147 181
40 % 154 300 109
30 % 154 303 122
Entity #9 | Chains: G
ribosomal protein L11 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 21 2146
95 % 13 21 2504 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 2.1
PDBFlex
90 % 13 21 2526
70 % 33 63 554
50 % 67 238 152
40 % 67 241 164
30 % 67 244 176

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures