Sequence Similarity Clusters for the Entities in PDB 1NWY

Entity #1 | Chains: 0
23S RIBOSOMAL RRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
ribosomal protein L13 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 19 2664
95 % 14 19 3312 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 14 19 3360
70 % 14 19 3325
50 % 14 19 3244
40 % 14 19 3156
30 % 14 19 2965
Entity #11 | Chains: I
ribosomal protein L14 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1595
95 % 16 24 2110 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 16 24 2161
70 % 151 211 85
50 % 184 359 52
40 % 282 543 20
30 % 282 543 33
Entity #12 | Chains: J
ribosomal protein L15 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1590
95 % 16 24 2099 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.9
PDBFlex
90 % 16 24 2149
70 % 16 24 2142
50 % 183 342 64
40 % 183 342 83
30 % 281 523 37
Entity #13 | Chains: K
ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 27 1344
95 % 18 27 1801 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.7
PDBFlex
90 % 18 27 1839
70 % 145 182 96
50 % 185 350 56
40 % 185 350 71
30 % 185 350 84
Entity #14 | Chains: L
ribosomal protein L17 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1606
95 % 16 24 2119 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 16 24 2171
70 % 16 24 2162
50 % 177 322 69
40 % 184 347 68
30 % 184 349 83
Entity #15 | Chains: M
ribosomal protein L18 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 22 1739
95 % 16 24 2120 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 16 24 2172
70 % 16 24 2163
50 % 183 344 63
40 % 183 344 80
30 % 183 344 93
Entity #16 | Chains: N
ribosomal protein L19 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 19 2668
95 % 14 19 3315 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 3.3
PDBFlex
90 % 14 19 3363
70 % 14 19 3330
50 % 14 19 3248
40 % 14 19 3158
30 % 14 19 2968
Entity #17 | Chains: O
ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 1314
95 % 16 28 1758 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 16 28 1794
70 % 16 28 1819
50 % 184 347 57
40 % 184 354 67
30 % 184 354 82
Entity #18 | Chains: P
ribosomal protein L21 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 1318
95 % 16 28 1762 Flexibility: Medium
Max RMSD: 7.9, Avg RMSD: 3.5
PDBFlex
90 % 16 28 1798
70 % 16 28 1824
50 % 150 201 123
40 % 183 342 84
30 % 183 342 97
Entity #19 | Chains: Q
ribosomal protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 28 1310
95 % 19 30 1630 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 19 30 1666
70 % 19 30 1682
50 % 19 30 1715
40 % 19 30 1718
30 % 19 30 1681
Entity #2 | Chains: 9
5S RIBOSOMAL RRNA rna, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
ribosomal protein L23 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 26 1443
95 % 16 26 1923 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 16 26 1969
70 % 16 26 1993
50 % 143 181 138
40 % 183 348 74
30 % 250 426 60
Entity #21 | Chains: S
ribosomal protein L24 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 25 1487
95 % 16 25 1993 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.6
PDBFlex
90 % 16 25 2042
70 % 16 25 2051
50 % 183 345 62
40 % 183 347 77
30 % 183 347 89
Entity #22 | Chains: T
general stress protein Ctc protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 25 1780
95 % 15 25 2323
90 % 15 25 2385
70 % 15 25 2382
50 % 15 25 2362
40 % 15 25 2346
30 % 15 25 2247
Entity #23 | Chains: U
ribosomal protein L27 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 29 1252
95 % 17 29 1673
90 % 17 29 1709
70 % 51 169 170
50 % 186 346 58
40 % 186 346 75
30 % 186 346 87
Entity #24 | Chains: W
ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 26 1448
95 % 16 26 1928 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 16 26 1974
70 % 16 26 1999
50 % 16 26 2004
40 % 16 26 1995
30 % 246 413 65
Entity #25 | Chains: X
ribosomal protein L30 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1620
95 % 16 24 2140 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 16 24 2190
70 % 16 24 2177
50 % 56 185 191
40 % 184 348 72
30 % 184 348 86
Entity #26 | Chains: Y
ribosomal protein L31 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 12 3492
95 % 2 12 4272 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 2 12 4302
70 % 2 12 4226
50 % 122 204 132
40 % 122 215 144
30 % 122 215 158
Entity #27 | Chains: Z
ribosomal protein L32 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 34 1051
95 % 19 34 1432 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 19 34 1456
70 % 19 34 1455
50 % 149 201 126
40 % 186 344 81
30 % 186 344 95
Entity #28 | Chains: 1
ribosomal protein L33 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 2036
95 % 13 20 2611 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.5
PDBFlex
90 % 13 20 2659
70 % 13 20 2644
50 % 46 160 213
40 % 160 318 94
30 % 160 318 108
Entity #29 | Chains: 2
ribosomal protein L34 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 1325
95 % 16 28 1768 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 16 28 1804
70 % 49 164 172
50 % 56 187 190
40 % 56 187 206
30 % 56 187 218
Entity #3 | Chains: A
ribosomal protein L2 protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 22 1703
95 % 16 24 2063
90 % 16 24 2112
70 % 144 179 99
50 % 184 347 59
40 % 184 347 78
30 % 184 347 90
Entity #30 | Chains: 3
ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 1324
95 % 16 28 1767 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.7
PDBFlex
90 % 16 28 1802
70 % 16 28 1829
50 % 144 183 135
40 % 184 340 86
30 % 184 340 98
Entity #31 | Chains: 4
ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 22 1748
95 % 10 22 2291 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 10 22 2355
70 % 99 156 150
50 % 132 296 87
40 % 132 296 108
30 % 132 296 121
Entity #4 | Chains: B
ribosomal protein L3 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 27 1339
95 % 16 27 1793 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 16 27 1831
70 % 16 27 1858
50 % 189 351 61
40 % 189 354 73
30 % 189 355 85
Entity #5 | Chains: C
ribosomal protein L4 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 29 1243
95 % 18 29 1659 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 18 29 1696
70 % 18 29 1721
50 % 146 184 133
40 % 187 348 76
30 % 187 348 88
Entity #6 | Chains: D
ribosomal protein L5 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1583
95 % 16 24 2094 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 16 24 2144
70 % 144 179 98
50 % 188 347 60
40 % 188 347 79
30 % 188 347 91
Entity #7 | Chains: E
ribosomal protein L6 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 22 1723
95 % 15 22 2262 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 15 22 2326
70 % 15 22 2319
50 % 150 213 116
40 % 183 352 69
30 % 281 534 36
Entity #8 | Chains: F
ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 15686
95 % 2 5 14688
90 % 2 5 14415
70 % 2 5 13526
50 % 113 130 182
40 % 143 269 111
30 % 143 277 122
Entity #9 | Chains: G
ribosomal protein L11 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 19 2095
95 % 13 21 2346 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 2.2
PDBFlex
90 % 13 21 2409
70 % 32 62 506
50 % 66 229 143
40 % 66 232 154
30 % 66 235 166

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.