Sequence Similarity Clusters for the Entities in PDB 1NWY

Entity #1 | Chains: 0
23S RIBOSOMAL RRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
ribosomal protein L13 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 2501
95 % 14 19 3138
90 % 14 19 3184
70 % 14 19 3153
50 % 14 19 3084
40 % 14 19 3010
30 % 14 19 2825
Entity #11 | Chains: I
ribosomal protein L14 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 24 1485
95 % 16 24 1988
90 % 16 24 2043
70 % 141 176 91
50 % 180 330 57
40 % 180 334 66
30 % 276 510 31
Entity #12 | Chains: J
ribosomal protein L15 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 24 1481
95 % 16 24 1978
90 % 16 24 2031
70 % 16 24 2037
50 % 16 24 2024
40 % 179 315 80
30 % 275 492 37
Entity #13 | Chains: K
ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 27 1255
95 % 18 27 1707
90 % 18 27 1739
70 % 143 180 88
50 % 181 321 59
40 % 181 321 73
30 % 181 321 84
Entity #14 | Chains: L
ribosomal protein L17 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 24 1495
95 % 16 24 1995
90 % 16 24 2051
70 % 16 24 2056
50 % 175 310 65
40 % 180 323 68
30 % 180 325 80
Entity #15 | Chains: M
ribosomal protein L18 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 22 1624
95 % 16 24 1996
90 % 16 24 2052
70 % 16 24 2057
50 % 179 315 68
40 % 179 315 81
30 % 179 315 94
Entity #16 | Chains: N
ribosomal protein L19 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 2504
95 % 14 19 3141
90 % 14 19 3187
70 % 14 19 3158
50 % 14 19 3088
40 % 14 19 3012
30 % 14 19 2828
Entity #17 | Chains: O
ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 28 1217
95 % 16 28 1664
90 % 16 28 1692
70 % 16 28 1728
50 % 180 320 58
40 % 180 325 69
30 % 180 325 82
Entity #18 | Chains: P
ribosomal protein L21 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 28 1221
95 % 16 28 1668
90 % 16 28 1696
70 % 16 28 1732
50 % 146 189 121
40 % 179 315 82
30 % 179 315 95
Entity #19 | Chains: Q
ribosomal protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 28 1213
95 % 19 30 1531
90 % 19 30 1564
70 % 19 30 1595
50 % 19 30 1635
40 % 19 30 1651
30 % 19 30 1612
Entity #2 | Chains: 9
5S RIBOSOMAL RRNA rna, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
ribosomal protein L23 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 26 1348
95 % 16 26 1820
90 % 16 26 1868
70 % 16 26 1896
50 % 141 179 126
40 % 179 321 74
30 % 246 399 60
Entity #21 | Chains: S
ribosomal protein L24 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 25 1385
95 % 16 25 1885
90 % 16 25 1938
70 % 16 25 1956
50 % 179 318 66
40 % 179 318 77
30 % 179 320 88
Entity #22 | Chains: T
general stress protein Ctc protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 25 1654
95 % 15 25 2193
90 % 15 25 2260
70 % 15 25 2265
50 % 15 25 2242
40 % 15 25 2242
30 % 15 25 2143
Entity #23 | Chains: U
ribosomal protein L27 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 29 1149
95 % 17 29 1572
90 % 17 29 1603
70 % 51 159 172
50 % 177 313 69
40 % 177 313 83
30 % 177 313 96
Entity #24 | Chains: W
ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 26 1352
95 % 16 26 1825
90 % 16 26 1872
70 % 16 26 1900
50 % 16 26 1905
40 % 16 26 1909
30 % 175 317 98
Entity #25 | Chains: X
ribosomal protein L30 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 24 1508
95 % 16 24 2016
90 % 16 24 2069
70 % 16 24 2071
50 % 54 162 197
40 % 180 321 72
30 % 180 321 83
Entity #26 | Chains: Y
ribosomal protein L31 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 12 3285
95 % 2 12 4043
90 % 2 12 4070
70 % 2 12 3993
50 % 120 192 130
40 % 120 193 144
30 % 120 193 160
Entity #27 | Chains: Z
ribosomal protein L32 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 34 981
95 % 19 34 1353
90 % 19 34 1370
70 % 19 34 1393
50 % 140 181 128
40 % 178 317 86
30 % 178 317 100
Entity #28 | Chains: 1
ribosomal protein L33 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 20 1896
95 % 13 20 2476
90 % 13 20 2527
70 % 13 20 2511
50 % 46 149 217
40 % 158 292 97
30 % 158 292 110
Entity #29 | Chains: 2
ribosomal protein L34 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 28 1230
95 % 16 28 1674
90 % 16 28 1704
70 % 49 153 175
50 % 54 162 198
40 % 54 162 217
30 % 54 162 227
Entity #3 | Chains: A
ribosomal protein L2 protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 22 1589
95 % 16 24 1945
90 % 16 24 1997
70 % 142 177 90
50 % 180 318 67
40 % 180 318 78
30 % 180 318 89
Entity #30 | Chains: 3
ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 28 1228
95 % 16 28 1672
90 % 16 28 1701
70 % 16 28 1739
50 % 142 181 125
40 % 180 313 85
30 % 180 313 99
Entity #31 | Chains: 4
ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 22 1633
95 % 10 22 2164
90 % 10 22 2231
70 % 97 139 159
50 % 130 269 93
40 % 130 269 114
30 % 130 269 126
Entity #4 | Chains: B
ribosomal protein L3 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 27 1247
95 % 16 27 1696
90 % 16 27 1727
70 % 16 27 1762
50 % 185 324 63
40 % 185 325 76
30 % 185 326 86
Entity #5 | Chains: C
ribosomal protein L4 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 29 1141
95 % 18 29 1562
90 % 18 29 1595
70 % 18 29 1635
50 % 144 182 124
40 % 144 182 142
30 % 183 321 85
Entity #6 | Chains: D
ribosomal protein L5 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 24 1474
95 % 16 24 1973
90 % 16 24 2026
70 % 142 177 89
50 % 184 321 62
40 % 184 321 75
30 % 184 321 87
Entity #7 | Chains: E
ribosomal protein L6 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 22 1605
95 % 15 22 2130
90 % 15 22 2196
70 % 15 22 2199
50 % 146 194 118
40 % 179 323 71
30 % 275 501 34
Entity #8 | Chains: F
ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 14827
95 % 2 5 13914
90 % 2 5 13659
70 % 2 5 12816
50 % 111 128 177
40 % 141 257 109
30 % 141 258 120
Entity #9 | Chains: G
ribosomal protein L11 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 19 1957
95 % 13 21 2217
90 % 13 21 2284
70 % 32 62 462
50 % 66 217 140
40 % 66 220 154
30 % 66 223 168

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.