Sequence Similarity Clusters for the Entities in PDB 1NWY

Entity #1 | Chains: 0
23S RIBOSOMAL RRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
ribosomal protein L13 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 19 2573
95 % 14 19 3208 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 14 19 3254
70 % 14 19 3222
50 % 14 19 3151
40 % 14 19 3066
30 % 14 19 2875
Entity #11 | Chains: I
ribosomal protein L14 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1537
95 % 16 24 2042 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 16 24 2095
70 % 149 203 85
50 % 182 350 53
40 % 279 531 20
30 % 279 531 33
Entity #12 | Chains: J
ribosomal protein L15 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1533
95 % 16 24 2030 Flexibility: Medium
Max RMSD: 8.4, Avg RMSD: 3.1
PDBFlex
90 % 16 24 2081
70 % 16 24 2083
50 % 16 24 2065
40 % 181 333 83
30 % 278 511 37
Entity #13 | Chains: K
ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 27 1295
95 % 18 27 1748 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.6
PDBFlex
90 % 18 27 1785
70 % 144 181 91
50 % 183 341 56
40 % 183 341 71
30 % 183 341 84
Entity #14 | Chains: L
ribosomal protein L17 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1546
95 % 16 24 2050 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 16 24 2104
70 % 16 24 2104
50 % 176 320 67
40 % 182 341 67
30 % 182 343 81
Entity #15 | Chains: M
ribosomal protein L18 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 22 1674
95 % 16 24 2051 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.6
PDBFlex
90 % 16 24 2105
70 % 16 24 2105
50 % 181 335 63
40 % 181 335 80
30 % 181 335 92
Entity #16 | Chains: N
ribosomal protein L19 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 19 2576
95 % 14 19 3211 Flexibility: Low
Max RMSD: 7.0, Avg RMSD: 2.8
PDBFlex
90 % 14 19 3257
70 % 14 19 3227
50 % 14 19 3155
40 % 14 19 3068
30 % 14 19 2878
Entity #17 | Chains: O
ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 1267
95 % 16 28 1708 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 16 28 1739
70 % 16 28 1761
50 % 182 338 57
40 % 182 345 68
30 % 182 345 82
Entity #18 | Chains: P
ribosomal protein L21 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 1271
95 % 16 28 1712 Flexibility: Medium
Max RMSD: 7.9, Avg RMSD: 3.8
PDBFlex
90 % 16 28 1743
70 % 16 28 1766
50 % 148 196 121
40 % 181 333 84
30 % 181 333 94
Entity #19 | Chains: Q
ribosomal protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 28 1264
95 % 19 30 1576
90 % 19 30 1613
70 % 19 30 1625
50 % 19 30 1656
40 % 19 30 1667
30 % 19 30 1635
Entity #2 | Chains: 9
5S RIBOSOMAL RRNA rna, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
ribosomal protein L23 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 26 1389
95 % 16 26 1867
90 % 16 26 1912
70 % 16 26 1934
50 % 142 180 130
40 % 181 339 74
30 % 248 417 61
Entity #21 | Chains: S
ribosomal protein L24 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 25 1435
95 % 16 25 1938 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.6
PDBFlex
90 % 16 25 1986
70 % 16 25 2000
50 % 181 336 62
40 % 181 336 79
30 % 181 338 89
Entity #22 | Chains: T
general stress protein Ctc protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 25 1706
95 % 15 25 2245 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 1.8
PDBFlex
90 % 15 25 2310
70 % 15 25 2308
50 % 15 25 2291
40 % 15 25 2279
30 % 15 25 2190
Entity #23 | Chains: U
ribosomal protein L27 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 29 1203
95 % 17 29 1618 Flexibility: Medium
Max RMSD: 11.9, Avg RMSD: 5.2
PDBFlex
90 % 17 29 1652
70 % 51 168 169
50 % 184 337 58
40 % 184 337 75
30 % 184 337 87
Entity #24 | Chains: W
ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 26 1394
95 % 16 26 1872 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 16 26 1916
70 % 16 26 1939
50 % 16 26 1940
40 % 16 26 1939
30 % 244 407 65
Entity #25 | Chains: X
ribosomal protein L30 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1558
95 % 16 24 2070 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 16 24 2122
70 % 16 24 2118
50 % 55 179 188
40 % 182 339 72
30 % 182 339 86
Entity #26 | Chains: Y
ribosomal protein L31 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 12 3371
95 % 2 12 4137 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 2 12 4166
70 % 2 12 4083
50 % 121 202 126
40 % 121 206 142
30 % 121 209 156
Entity #27 | Chains: Z
ribosomal protein L32 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 34 1008
95 % 19 34 1384 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 19 34 1402
70 % 19 34 1413
50 % 147 196 123
40 % 180 332 88
30 % 180 332 98
Entity #28 | Chains: 1
ribosomal protein L33 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 1950
95 % 13 20 2526 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.5
PDBFlex
90 % 13 20 2576
70 % 13 20 2558
50 % 46 158 207
40 % 159 311 93
30 % 159 311 107
Entity #29 | Chains: 2
ribosomal protein L34 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 1277
95 % 16 28 1717 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.0
PDBFlex
90 % 16 28 1750
70 % 49 162 172
50 % 55 179 189
40 % 55 179 207
30 % 55 179 216
Entity #3 | Chains: A
ribosomal protein L2 protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 22 1638
95 % 16 24 1996 Flexibility: Low
Max RMSD: 7.5, Avg RMSD: 2.2
PDBFlex
90 % 16 24 2045
70 % 143 178 93
50 % 182 338 59
40 % 182 338 77
30 % 182 338 90
Entity #30 | Chains: 3
ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 1276
95 % 16 28 1716 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.7
PDBFlex
90 % 16 28 1748
70 % 16 28 1772
50 % 143 182 129
40 % 182 331 86
30 % 182 331 96
Entity #31 | Chains: 4
ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 22 1683
95 % 10 22 2216 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 10 22 2282
70 % 98 149 153
50 % 131 288 87
40 % 131 288 108
30 % 131 288 120
Entity #4 | Chains: B
ribosomal protein L3 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 27 1291
95 % 16 27 1741 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.6
PDBFlex
90 % 16 27 1776
70 % 16 27 1800
50 % 187 342 61
40 % 187 345 73
30 % 187 346 85
Entity #5 | Chains: C
ribosomal protein L4 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 29 1193
95 % 18 29 1606 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 18 29 1642
70 % 18 29 1661
50 % 145 183 127
40 % 185 339 76
30 % 185 339 88
Entity #6 | Chains: D
ribosomal protein L5 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1526
95 % 16 24 2025 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.5
PDBFlex
90 % 16 24 2076
70 % 143 178 92
50 % 186 338 60
40 % 186 338 78
30 % 186 338 91
Entity #7 | Chains: E
ribosomal protein L6 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 22 1655
95 % 15 22 2185 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 15 22 2250
70 % 15 22 2245
50 % 148 205 115
40 % 181 343 70
30 % 278 522 36
Entity #8 | Chains: F
ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 15199
95 % 2 5 14245 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 5 13974
70 % 2 5 13110
50 % 112 129 182
40 % 142 267 110
30 % 142 272 119
Entity #9 | Chains: G
ribosomal protein L11 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 19 2009
95 % 13 21 2268 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 2.1
PDBFlex
90 % 13 21 2333
70 % 32 62 482
50 % 66 228 136
40 % 66 231 149
30 % 66 234 164

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.