Sequence Similarity Clusters for the Entities in PDB 1NWY

Entity #1 | Chains: 0
23S RIBOSOMAL RRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
ribosomal protein L13 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 2608
95 % 14 19 3254
90 % 14 19 3300
70 % 14 19 3270
50 % 14 19 3196
40 % 14 19 3113
30 % 14 19 2924
Entity #11 | Chains: I
ribosomal protein L14 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 24 1565
95 % 16 24 2079
90 % 16 24 2132
70 % 151 207 84
50 % 184 355 54
40 % 282 539 20
30 % 282 539 33
Entity #12 | Chains: J
ribosomal protein L15 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 24 1561
95 % 16 24 2067
90 % 16 24 2117
70 % 16 24 2116
50 % 16 24 2109
40 % 183 338 82
30 % 281 519 37
Entity #13 | Chains: K
ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 27 1313
95 % 18 27 1777
90 % 18 27 1813
70 % 145 182 91
50 % 185 346 55
40 % 185 346 71
30 % 185 346 84
Entity #14 | Chains: L
ribosomal protein L17 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 24 1575
95 % 16 24 2087
90 % 16 24 2141
70 % 16 24 2139
50 % 177 322 67
40 % 184 344 69
30 % 184 346 80
Entity #15 | Chains: M
ribosomal protein L18 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 22 1707
95 % 16 24 2088
90 % 16 24 2142
70 % 16 24 2140
50 % 183 340 64
40 % 183 340 81
30 % 183 340 92
Entity #16 | Chains: N
ribosomal protein L19 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 2611
95 % 14 19 3257
90 % 14 19 3303
70 % 14 19 3275
50 % 14 19 3200
40 % 14 19 3115
30 % 14 19 2927
Entity #17 | Chains: O
ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 28 1283
95 % 16 28 1736
90 % 16 28 1771
70 % 16 28 1795
50 % 184 343 56
40 % 184 350 67
30 % 184 350 81
Entity #18 | Chains: P
ribosomal protein L21 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 28 1287
95 % 16 28 1740
90 % 16 28 1775
70 % 16 28 1800
50 % 150 198 123
40 % 183 338 83
30 % 183 338 93
Entity #19 | Chains: Q
ribosomal protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 28 1279
95 % 19 30 1603
90 % 19 30 1640
70 % 19 30 1654
50 % 19 30 1690
40 % 19 30 1697
30 % 19 30 1664
Entity #2 | Chains: 9
5S RIBOSOMAL RRNA rna, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
ribosomal protein L23 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 26 1411
95 % 16 26 1897
90 % 16 26 1943
70 % 16 26 1966
50 % 143 181 131
40 % 183 344 73
30 % 250 422 59
Entity #21 | Chains: S
ribosomal protein L24 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 25 1457
95 % 16 25 1966
90 % 16 25 2014
70 % 16 25 2026
50 % 183 341 63
40 % 183 343 76
30 % 183 343 88
Entity #22 | Chains: T
general stress protein Ctc protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 25 1745
95 % 15 25 2291
90 % 15 25 2354
70 % 15 25 2354
50 % 15 25 2339
40 % 15 25 2320
30 % 15 25 2226
Entity #23 | Chains: U
ribosomal protein L27 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 29 1223
95 % 17 29 1647
90 % 17 29 1683
70 % 51 169 168
50 % 186 342 57
40 % 186 342 74
30 % 186 342 86
Entity #24 | Chains: W
ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 26 1415
95 % 16 26 1902
90 % 16 26 1948
70 % 16 26 1972
50 % 16 26 1982
40 % 16 26 1974
30 % 246 410 65
Entity #25 | Chains: X
ribosomal protein L30 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 24 1589
95 % 16 24 2108
90 % 16 24 2160
70 % 16 24 2154
50 % 56 181 189
40 % 184 342 77
30 % 184 342 89
Entity #26 | Chains: Y
ribosomal protein L31 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 12 3429
95 % 2 12 4206
90 % 2 12 4237
70 % 2 12 4166
50 % 122 204 126
40 % 122 208 142
30 % 122 213 156
Entity #27 | Chains: Z
ribosomal protein L32 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 34 1030
95 % 19 34 1413
90 % 19 34 1435
70 % 19 34 1433
50 % 149 198 124
40 % 182 335 87
30 % 182 335 99
Entity #28 | Chains: 1
ribosomal protein L33 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 20 1995
95 % 13 20 2573
90 % 13 20 2621
70 % 13 20 2606
50 % 46 159 209
40 % 160 315 93
30 % 160 315 107
Entity #29 | Chains: 2
ribosomal protein L34 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 28 1294
95 % 16 28 1746
90 % 16 28 1781
70 % 49 163 170
50 % 56 183 186
40 % 56 183 204
30 % 56 183 215
Entity #3 | Chains: A
ribosomal protein L2 protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 22 1671
95 % 16 24 2032
90 % 16 24 2080
70 % 144 179 94
50 % 184 343 59
40 % 184 343 78
30 % 184 343 90
Entity #30 | Chains: 3
ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 28 1293
95 % 16 28 1745
90 % 16 28 1779
70 % 16 28 1805
50 % 144 183 129
40 % 184 336 85
30 % 184 336 97
Entity #31 | Chains: 4
ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 22 1716
95 % 10 22 2260
90 % 10 22 2325
70 % 99 152 151
50 % 132 292 86
40 % 132 292 107
30 % 132 292 120
Entity #4 | Chains: B
ribosomal protein L3 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 27 1308
95 % 16 27 1770
90 % 16 27 1806
70 % 16 27 1832
50 % 189 347 61
40 % 189 350 72
30 % 189 351 85
Entity #5 | Chains: C
ribosomal protein L4 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 29 1214
95 % 18 29 1633
90 % 18 29 1671
70 % 18 29 1695
50 % 146 184 127
40 % 187 344 75
30 % 187 344 87
Entity #6 | Chains: D
ribosomal protein L5 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 24 1554
95 % 16 24 2062
90 % 16 24 2112
70 % 144 179 92
50 % 188 343 60
40 % 188 343 79
30 % 188 343 91
Entity #7 | Chains: E
ribosomal protein L6 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 22 1689
95 % 15 22 2230
90 % 15 22 2295
70 % 15 22 2292
50 % 150 209 113
40 % 183 348 70
30 % 281 530 35
Entity #8 | Chains: F
ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 15450
95 % 2 5 14484
90 % 2 5 14213
70 % 2 5 13354
50 % 113 130 179
40 % 143 269 109
30 % 143 276 119
Entity #9 | Chains: G
ribosomal protein L11 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 19 2050
95 % 13 21 2314
90 % 13 21 2378
70 % 32 62 494
50 % 66 229 137
40 % 66 232 151
30 % 66 235 164

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.