Sequence Similarity Clusters for the Entities in PDB 1NWY

Entity #1 | Chains: 0
23S RIBOSOMAL RRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
ribosomal protein L13 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 19 2786
95 % 14 19 3445 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 14 19 3504
70 % 14 19 3462
50 % 14 19 3382
40 % 14 19 3278
30 % 14 19 3077
Entity #11 | Chains: I
ribosomal protein L14 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1659
95 % 16 24 2209 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 16 24 2265
70 % 161 225 84
50 % 194 382 42
40 % 297 583 20
30 % 297 583 35
Entity #12 | Chains: J
ribosomal protein L15 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1655
95 % 16 24 2201 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.9
PDBFlex
90 % 16 24 2255
70 % 16 24 2252
50 % 193 364 61
40 % 193 364 81
30 % 296 558 40
Entity #13 | Chains: K
ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 27 1413
95 % 18 27 1902 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.7
PDBFlex
90 % 18 27 1945
70 % 155 196 97
50 % 195 374 44
40 % 195 374 62
30 % 195 374 78
Entity #14 | Chains: L
ribosomal protein L17 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1668
95 % 16 24 2217 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 16 24 2274
70 % 16 24 2271
50 % 187 344 64
40 % 194 370 59
30 % 194 372 76
Entity #15 | Chains: M
ribosomal protein L18 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 22 1827
95 % 16 24 2218 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 16 24 2275
70 % 16 24 2272
50 % 193 367 58
40 % 193 367 77
30 % 193 367 93
Entity #16 | Chains: N
ribosomal protein L19 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 19 2790
95 % 14 19 3448 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 3.3
PDBFlex
90 % 14 19 3507
70 % 14 19 3467
50 % 14 19 3386
40 % 14 19 3280
30 % 14 19 3080
Entity #17 | Chains: O
ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 1376
95 % 16 28 1852 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 16 28 1891
70 % 16 28 1908
50 % 194 369 48
40 % 194 377 58
30 % 194 377 75
Entity #18 | Chains: P
ribosomal protein L21 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 1381
95 % 16 28 1857 Flexibility: Medium
Max RMSD: 7.9, Avg RMSD: 3.5
PDBFlex
90 % 16 28 1895
70 % 16 28 1914
50 % 160 215 118
40 % 193 364 82
30 % 193 364 95
Entity #19 | Chains: Q
ribosomal protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 28 1371
95 % 19 30 1707 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 19 30 1748
70 % 19 30 1758
50 % 19 30 1790
40 % 19 30 1791
30 % 19 30 1751
Entity #2 | Chains: 9
5S RIBOSOMAL RRNA rna, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
ribosomal protein L23 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 26 1503
95 % 16 26 2030 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 16 26 2078
70 % 16 26 2087
50 % 153 195 133
40 % 193 370 71
30 % 260 449 65
Entity #21 | Chains: S
ribosomal protein L24 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 25 1541
95 % 16 25 2082 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.6
PDBFlex
90 % 16 25 2134
70 % 16 25 2144
50 % 193 367 59
40 % 193 369 76
30 % 193 369 91
Entity #22 | Chains: T
general stress protein Ctc protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 25 1867
95 % 15 25 2435
90 % 15 25 2499
70 % 15 25 2505
50 % 15 25 2485
40 % 15 25 2452
30 % 15 25 2341
Entity #23 | Chains: U
ribosomal protein L27 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 29 1310
95 % 17 29 1768
90 % 17 29 1809
70 % 51 178 173
50 % 196 369 52
40 % 196 369 69
30 % 196 369 86
Entity #24 | Chains: W
ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 26 1508
95 % 16 26 2037 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 16 26 2085
70 % 16 26 2094
50 % 16 26 2096
40 % 16 26 2090
30 % 256 435 67
Entity #25 | Chains: X
ribosomal protein L30 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1685
95 % 16 24 2237 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 16 24 2293
70 % 16 24 2286
50 % 56 193 196
40 % 194 370 70
30 % 194 370 87
Entity #26 | Chains: Y
ribosomal protein L31 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 12 3641
95 % 2 12 4440 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 2 12 4480
70 % 2 12 4388
50 % 132 226 125
40 % 132 237 140
30 % 132 238 145
Entity #27 | Chains: Z
ribosomal protein L32 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 34 1102
95 % 19 34 1484 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 19 34 1508
70 % 19 34 1508
50 % 159 215 121
40 % 196 366 78
30 % 196 366 94
Entity #28 | Chains: 1
ribosomal protein L33 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 2141
95 % 13 20 2725 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.5
PDBFlex
90 % 13 20 2776
70 % 13 20 2762
50 % 46 168 214
40 % 169 340 96
30 % 169 340 106
Entity #29 | Chains: 2
ribosomal protein L34 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 1389
95 % 16 28 1863 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 16 28 1902
70 % 49 172 175
50 % 56 195 191
40 % 56 195 206
30 % 56 195 216
Entity #3 | Chains: A
ribosomal protein L2 protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 22 1786
95 % 16 24 2158
90 % 16 24 2210
70 % 154 193 99
50 % 194 373 46
40 % 297 560 22
30 % 297 560 39
Entity #30 | Chains: 3
ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 1388
95 % 16 28 1862 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.7
PDBFlex
90 % 16 28 1900
70 % 16 28 1920
50 % 154 197 130
40 % 194 362 84
30 % 194 362 96
Entity #31 | Chains: 4
ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 22 1835
95 % 10 22 2403 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 10 22 2469
70 % 108 170 148
50 % 141 318 87
40 % 141 318 105
30 % 141 318 119
Entity #4 | Chains: B
ribosomal protein L3 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 27 1407
95 % 16 27 1892 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 16 27 1933
70 % 16 27 1950
50 % 199 374 57
40 % 199 378 63
30 % 199 379 79
Entity #5 | Chains: C
ribosomal protein L4 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 29 1295
95 % 18 29 1750 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 18 29 1793
70 % 18 29 1802
50 % 156 198 127
40 % 197 370 74
30 % 197 371 88
Entity #6 | Chains: D
ribosomal protein L5 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1648
95 % 16 24 2194 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 16 24 2247
70 % 156 195 95
50 % 200 371 47
40 % 200 371 64
30 % 200 371 80
Entity #7 | Chains: E
ribosomal protein L6 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 22 1807
95 % 15 22 2372 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 15 22 2441
70 % 15 22 2445
50 % 160 228 112
40 % 193 375 61
30 % 296 573 38
Entity #8 | Chains: F
ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 16353
95 % 2 5 15238
90 % 2 5 14954
70 % 2 5 14018
50 % 123 144 178
40 % 153 289 110
30 % 153 297 120
Entity #9 | Chains: G
ribosomal protein L11 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 19 2196
95 % 13 21 2461 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 2.2
PDBFlex
90 % 13 21 2524
70 % 33 63 548
50 % 67 235 149
40 % 67 238 159
30 % 67 241 168

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures