Sequence Similarity Clusters for the Entities in PDB 1NWY

Entity #1 | Chains: 0
23S RIBOSOMAL RRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
ribosomal protein L13 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 2457
95 % 14 19 3089
90 % 14 19 3132
70 % 14 19 3103
50 % 14 19 3036
40 % 14 19 2958
30 % 14 19 2785
Entity #11 | Chains: I
ribosomal protein L14 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 24 1449
95 % 16 24 1952
90 % 16 24 2000
70 % 141 176 85
50 % 180 328 54
40 % 180 332 63
30 % 276 506 29
Entity #12 | Chains: J
ribosomal protein L15 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 24 1443
95 % 16 24 1940
90 % 16 24 1986
70 % 16 24 1999
50 % 16 24 1994
40 % 179 313 77
30 % 275 488 35
Entity #13 | Chains: K
ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 27 1219
95 % 18 27 1674
90 % 18 27 1705
70 % 143 180 82
50 % 181 319 56
40 % 181 319 70
30 % 181 319 83
Entity #14 | Chains: L
ribosomal protein L17 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 24 1458
95 % 16 24 1959
90 % 16 24 2008
70 % 16 24 2016
50 % 175 308 59
40 % 180 321 64
30 % 180 323 79
Entity #15 | Chains: M
ribosomal protein L18 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 22 1593
95 % 16 24 1960
90 % 16 24 2009
70 % 16 24 2017
50 % 179 313 62
40 % 179 313 78
30 % 179 313 92
Entity #16 | Chains: N
ribosomal protein L19 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 2460
95 % 14 19 3092
90 % 14 19 3135
70 % 14 19 3108
50 % 14 19 3040
40 % 14 19 2960
30 % 14 19 2788
Entity #17 | Chains: O
ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 28 1183
95 % 16 28 1632
90 % 16 28 1663
70 % 16 28 1700
50 % 180 318 55
40 % 180 323 66
30 % 180 323 81
Entity #18 | Chains: P
ribosomal protein L21 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 28 1187
95 % 16 28 1636
90 % 16 28 1667
70 % 16 28 1704
50 % 146 189 117
40 % 179 313 79
30 % 179 313 93
Entity #19 | Chains: Q
ribosomal protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 28 1180
95 % 19 30 1507
90 % 19 30 1543
70 % 19 30 1569
50 % 19 30 1612
40 % 19 30 1625
30 % 19 30 1590
Entity #2 | Chains: 9
5S RIBOSOMAL RRNA rna, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
ribosomal protein L23 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 26 1310
95 % 16 26 1786
90 % 16 26 1833
70 % 16 26 1858
50 % 141 179 122
40 % 179 319 71
30 % 246 397 57
Entity #21 | Chains: S
ribosomal protein L24 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 25 1350
95 % 16 25 1836
90 % 16 25 1884
70 % 16 25 1913
50 % 179 316 60
40 % 179 316 74
30 % 179 318 87
Entity #22 | Chains: T
general stress protein Ctc protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 25 1620
95 % 15 25 2155
90 % 15 25 2219
70 % 15 25 2225
50 % 15 25 2203
40 % 15 25 2199
30 % 15 25 2104
Entity #23 | Chains: U
ribosomal protein L27 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 29 1119
95 % 17 29 1546
90 % 17 29 1580
70 % 51 157 167
50 % 177 311 63
40 % 177 311 80
30 % 177 311 94
Entity #24 | Chains: W
ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 26 1316
95 % 16 26 1793
90 % 16 26 1840
70 % 16 26 1863
50 % 16 26 1874
40 % 16 26 1879
30 % 175 315 96
Entity #25 | Chains: X
ribosomal protein L30 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 24 1470
95 % 16 24 1977
90 % 16 24 2026
70 % 16 24 2031
50 % 54 160 193
40 % 180 319 69
30 % 180 319 82
Entity #26 | Chains: Y
ribosomal protein L31 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 12 3239
95 % 2 12 3983
90 % 2 12 4008
70 % 2 12 3932
50 % 120 190 125
40 % 120 191 142
30 % 120 191 158
Entity #27 | Chains: Z
ribosomal protein L32 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 34 955
95 % 19 34 1320
90 % 19 34 1342
70 % 19 34 1370
50 % 140 181 123
40 % 178 315 84
30 % 178 315 98
Entity #28 | Chains: 1
ribosomal protein L33 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 20 1859
95 % 13 20 2433
90 % 13 20 2484
70 % 13 20 2468
50 % 46 147 213
40 % 158 290 93
30 % 158 290 111
Entity #29 | Chains: 2
ribosomal protein L34 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 28 1194
95 % 16 28 1641
90 % 16 28 1674
70 % 49 151 170
50 % 54 160 194
40 % 54 160 211
30 % 54 160 223
Entity #3 | Chains: A
ribosomal protein L2 protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 22 1556
95 % 16 24 1897
90 % 16 24 1942
70 % 142 177 84
50 % 180 316 61
40 % 180 316 75
30 % 180 316 89
Entity #30 | Chains: 3
ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 28 1193
95 % 16 28 1640
90 % 16 28 1672
70 % 16 28 1709
50 % 142 181 121
40 % 180 311 83
30 % 180 311 97
Entity #31 | Chains: 4
ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 22 1602
95 % 10 22 2128
90 % 10 22 2193
70 % 97 139 154
50 % 130 267 91
40 % 130 267 112
30 % 130 267 126
Entity #4 | Chains: B
ribosomal protein L3 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 27 1211
95 % 16 27 1665
90 % 16 27 1695
70 % 16 27 1735
50 % 185 322 58
40 % 185 323 73
30 % 185 324 85
Entity #5 | Chains: C
ribosomal protein L4 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 29 1112
95 % 18 29 1534
90 % 18 29 1571
70 % 18 29 1606
50 % 144 182 119
40 % 144 182 138
30 % 183 319 84
Entity #6 | Chains: D
ribosomal protein L5 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 24 1437
95 % 16 24 1934
90 % 16 24 1980
70 % 142 177 83
50 % 184 319 57
40 % 184 319 72
30 % 184 319 86
Entity #7 | Chains: E
ribosomal protein L6 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 22 1574
95 % 15 22 2096
90 % 15 22 2160
70 % 15 22 2163
50 % 146 194 114
40 % 179 321 68
30 % 275 497 32
Entity #8 | Chains: F
ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 14595
95 % 2 5 13701
90 % 2 5 13454
70 % 2 5 12622
50 % 111 128 174
40 % 141 255 105
30 % 141 256 119
Entity #9 | Chains: G
ribosomal protein L11 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 19 1912
95 % 13 21 2180
90 % 13 21 2243
70 % 32 62 446
50 % 66 215 137
40 % 66 218 150
30 % 66 221 164

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.