Sequence Similarity Clusters for the Entities in PDB 1NWY

Entity #1 | Chains: 0
23S RIBOSOMAL RRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
ribosomal protein L13 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 19 3066
95 % 14 19 3370 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 14 19 3427
70 % 14 19 3384
50 % 14 19 3299
40 % 14 19 3173
30 % 14 19 2952
Entity #11 | Chains: I
ribosomal protein L14 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1845
95 % 16 24 2140 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 16 24 2187
70 % 152 212 93
50 % 185 363 55
40 % 287 557 21
30 % 287 557 34
Entity #12 | Chains: J
ribosomal protein L15 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1780
95 % 16 24 2084 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.9
PDBFlex
90 % 16 24 2134
70 % 16 24 2149
50 % 184 346 68
40 % 184 346 90
30 % 184 346 100
Entity #13 | Chains: K
ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 27 1563
95 % 18 27 1855 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.7
PDBFlex
90 % 18 27 1895
70 % 146 183 101
50 % 186 354 60
40 % 186 354 77
30 % 186 354 87
Entity #14 | Chains: L
ribosomal protein L17 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1864
95 % 16 24 2159 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 16 24 2210
70 % 16 24 2237
50 % 185 345 62
40 % 185 351 74
30 % 185 353 83
Entity #15 | Chains: M
ribosomal protein L18 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 22 1976
95 % 16 24 2118 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 16 24 2164
70 % 16 24 2179
50 % 184 348 67
40 % 184 348 87
30 % 184 348 96
Entity #16 | Chains: N
ribosomal protein L19 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 19 3059
95 % 14 19 3361 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 3.3
PDBFlex
90 % 14 19 3418
70 % 14 19 3372
50 % 14 19 3289
40 % 14 19 3164
30 % 14 19 2947
Entity #17 | Chains: O
ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 1509
95 % 16 28 1769 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 16 28 1809
70 % 16 28 1835
50 % 185 351 59
40 % 185 358 71
30 % 185 358 84
Entity #18 | Chains: P
ribosomal protein L21 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 1532
95 % 16 28 1799 Flexibility: Medium
Max RMSD: 7.9, Avg RMSD: 3.5
PDBFlex
90 % 16 28 1839
70 % 16 28 1871
50 % 151 202 127
40 % 184 346 91
30 % 184 346 101
Entity #19 | Chains: Q
ribosomal protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 28 1531
95 % 19 30 1667 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 19 30 1708
70 % 19 30 1727
50 % 19 30 1758
40 % 19 30 1744
30 % 19 30 1703
Entity #2 | Chains: 9
5S RIBOSOMAL RRNA rna, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
ribosomal protein L23 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 26 1592
95 % 16 26 1883 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 16 26 1925
70 % 16 26 1952
50 % 144 182 141
40 % 251 430 45
30 % 251 430 64
Entity #21 | Chains: S
ribosomal protein L24 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 25 1720
95 % 16 25 2044 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.6
PDBFlex
90 % 16 25 2094
70 % 16 25 2109
50 % 184 349 65
40 % 184 351 84
30 % 184 351 94
Entity #22 | Chains: T
general stress protein Ctc protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 25 2100
95 % 15 25 2393
90 % 15 25 2465
70 % 15 25 2458
50 % 15 25 2451
40 % 15 25 2412
30 % 15 25 2270
Entity #23 | Chains: U
ribosomal protein L27 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 29 1441
95 % 17 29 1696
90 % 17 29 1737
70 % 51 172 172
50 % 187 350 63
40 % 187 350 81
30 % 187 350 91
Entity #24 | Chains: W
ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 26 1591
95 % 16 26 1865 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 16 26 1907
70 % 16 26 1936
50 % 16 26 1977
40 % 16 26 1952
30 % 247 417 69
Entity #25 | Chains: X
ribosomal protein L30 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1752
95 % 16 24 2059 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 16 24 2107
70 % 16 24 2124
50 % 56 188 195
40 % 185 352 79
30 % 185 352 90
Entity #26 | Chains: Y
ribosomal protein L31 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 12 3644
95 % 2 12 4008 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 2 12 4044
70 % 2 12 3979
50 % 123 208 136
40 % 123 219 148
30 % 123 219 167
Entity #27 | Chains: Z
ribosomal protein L32 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 34 1214
95 % 19 34 1445 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 19 34 1471
70 % 19 34 1478
50 % 183 342 70
40 % 187 348 88
30 % 187 348 97
Entity #28 | Chains: 1
ribosomal protein L33 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 2155
95 % 13 20 2443 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.5
PDBFlex
90 % 13 20 2516
70 % 13 20 2502
50 % 46 163 215
40 % 160 321 100
30 % 160 321 114
Entity #29 | Chains: 2
ribosomal protein L34 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 1503
95 % 16 28 1765 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 16 28 1804
70 % 49 167 174
50 % 56 190 194
40 % 56 190 212
30 % 56 190 229
Entity #3 | Chains: A
ribosomal protein L2 protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 24 1791
95 % 16 24 2090
90 % 16 24 2138
70 % 145 180 102
50 % 185 351 64
40 % 185 351 85
30 % 185 351 95
Entity #30 | Chains: 3
ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 1529
95 % 16 28 1795 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.7
PDBFlex
90 % 16 28 1836
70 % 16 28 1869
50 % 145 184 140
40 % 185 344 92
30 % 185 344 103
Entity #31 | Chains: 4
ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 22 2041
95 % 10 22 2338 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 10 22 2359
70 % 132 296 50
50 % 132 299 91
40 % 132 299 113
30 % 132 299 126
Entity #4 | Chains: B
ribosomal protein L3 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 27 1560
95 % 16 27 1848 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 16 27 1887
70 % 16 27 1923
50 % 190 355 66
40 % 190 358 82
30 % 190 359 89
Entity #5 | Chains: C
ribosomal protein L4 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 29 1450
95 % 18 29 1709 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 18 29 1749
70 % 18 29 1773
50 % 147 185 139
40 % 188 352 83
30 % 188 352 93
Entity #6 | Chains: D
ribosomal protein L5 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 24 1824
95 % 16 24 2123 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 16 24 2168
70 % 147 182 100
50 % 191 353 61
40 % 191 353 78
30 % 191 353 88
Entity #7 | Chains: E
ribosomal protein L6 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 22 2014
95 % 15 22 2309 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 15 22 2379
70 % 15 22 2377
50 % 151 214 123
40 % 184 356 76
30 % 286 547 38
Entity #8 | Chains: F
ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 15709
95 % 2 5 14620
90 % 2 5 14349
70 % 2 5 13460
50 % 114 131 186
40 % 144 276 114
30 % 144 279 128
Entity #9 | Chains: G
ribosomal protein L11 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 21 2064
95 % 13 21 2360 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 2.2
PDBFlex
90 % 13 21 2433
70 % 32 62 548
50 % 66 229 149
40 % 66 232 160
30 % 66 235 177

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures